Variant report

Variant	rs34121666
Chromosome Location	chr9:15242472-15242473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15240990..15244433-chr9:15303373..15307437,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155158	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13290550	0.82[AMR][1000 genomes]
rs62539786	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv521191	chr9:15218947-15246652	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15193400-15249600	Weak transcription	Colonic Mucosa	Colon
2	chr9:15221800-15242800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:15223400-15258200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:15224400-15242800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:15224600-15243600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:15224600-15244400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:15229800-15243000	Weak transcription	Gastric	stomach
8	chr9:15229800-15243000	Weak transcription	Ovary	ovary
9	chr9:15232000-15244400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:15232600-15246400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:15233600-15243400	Weak transcription	Fetal Stomach	stomach
12	chr9:15238400-15275400	Weak transcription	Fetal Intestine Large	intestine
13	chr9:15238800-15243600	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:15239000-15244200	Weak transcription	Esophagus	oesophagus
15	chr9:15239000-15247000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr9:15239400-15243600	Weak transcription	Pancreas	Pancrea
17	chr9:15240200-15242800	Weak transcription	Aorta	Aorta
18	chr9:15240200-15246800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr9:15240200-15248800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:15240200-15250800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr9:15240400-15243000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr9:15240400-15248800	Weak transcription	HepG2	liver
23	chr9:15240400-15249400	Weak transcription	Spleen	Spleen
24	chr9:15240400-15265600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:15240600-15275400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:15241000-15242600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:15241000-15242800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:15241000-15243000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:15241200-15242600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr9:15241200-15242600	Weak transcription	Osteobl	bone
31	chr9:15241200-15242800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:15241200-15242800	Weak transcription	NHDF-Ad	bronchial
33	chr9:15241200-15243400	Weak transcription	Primary T cells from cord blood	blood
34	chr9:15241200-15244000	Weak transcription	Stomach Mucosa	stomach
35	chr9:15241200-15244200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:15241200-15244200	Weak transcription	Small Intestine	intestine
37	chr9:15241200-15246600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr9:15241200-15273400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr9:15241200-15286200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr9:15242200-15243200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:15242200-15243400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:15242200-15244200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr9:15242400-15243200	Enhancers	Left Ventricle	heart
44	chr9:15242400-15244400	Strong transcription	Fetal Intestine Small	intestine
45	chr9:15242400-15244800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr9:15242400-15247200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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