Variant report

Variant	rs62539786
Chromosome Location	chr9:15231904-15231905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11791131	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13290550	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13301320	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34121666	0.82[AMR][1000 genomes]
rs35570964	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62539783	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62539784	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv521191	chr9:15218947-15246652	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2761504	chr9:15227680-15237785	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:15193400-15249600	Weak transcription	Colonic Mucosa	Colon
3	chr9:15221200-15242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:15221800-15233000	Weak transcription	Osteobl	bone
5	chr9:15221800-15242800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:15223400-15258200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:15223600-15232000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:15223600-15232600	Weak transcription	Fetal Stomach	stomach
9	chr9:15223800-15235200	Weak transcription	Fetal Lung	lung
10	chr9:15224400-15242800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:15224600-15232200	Weak transcription	Fetal Intestine Large	intestine
12	chr9:15224600-15235200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:15224600-15243600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:15224600-15244400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:15224800-15232800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:15224800-15235000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:15229800-15235000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:15229800-15240000	Weak transcription	Aorta	Aorta
19	chr9:15229800-15243000	Weak transcription	Gastric	stomach
20	chr9:15229800-15243000	Weak transcription	Ovary	ovary
21	chr9:15230000-15235200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr9:15230000-15235200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr9:15230600-15235200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr9:15231200-15233400	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr9:15231800-15232000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr9:15231800-15232200	Active TSS	Hela-S3	cervix
27	chr9:15231800-15232600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:15231800-15232600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr9:15231800-15232600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr9:15231800-15232800	Strong transcription	Primary T cells from cord blood	blood
31	chr9:15231800-15233000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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