Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111835502..111837243-chr5:111837890..111840358,2	MCF-7	breast:
2	chr5:111827330..111830310-chr5:111838037..111840196,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11740414	0.92[CEU][hapmap];0.84[AMR][1000 genomes]
rs11745418	0.88[CEU][hapmap]
rs1422541	0.92[CEU][hapmap];0.84[AMR][1000 genomes]
rs1445934	0.92[CEU][hapmap];0.81[AMR][1000 genomes]
rs1445935	0.92[CEU][hapmap]
rs163456	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs338842	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs338843	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs338850	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs338854	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs338863	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs338864	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs338867	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs338869	0.83[AMR][1000 genomes]
rs338873	0.92[CEU][hapmap]
rs341289	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs401722	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs430143	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs437318	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs445130	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73223853	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111838200-111840000	Enhancers	HUES6 Cell Line	embryonic stem cell

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