Variant report

Variant	rs34130647
Chromosome Location	chr4:87557212-87557213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13109115	1.00[AFR][1000 genomes]
rs35084226	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv879522	chr4:87473776-87644842	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv822635	chr4:87479576-87622176	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv879523	chr4:87517609-87594472	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv879524	chr4:87517609-87603929	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv2755470	chr4:87536515-87613212	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87541200-87571200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:87542800-87557600	Weak transcription	Brain Anterior Caudate	brain
3	chr4:87542800-87566400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:87544400-87571200	Weak transcription	Pancreas	Pancrea
5	chr4:87546200-87569400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:87552800-87557800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:87553400-87557800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:87554600-87558800	Weak transcription	Lung	lung
9	chr4:87554600-87567000	Weak transcription	Osteobl	bone
10	chr4:87554600-87567400	Weak transcription	Esophagus	oesophagus
11	chr4:87554800-87566000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:87555000-87558800	Weak transcription	Brain Germinal Matrix	brain
13	chr4:87555200-87559400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:87555600-87557800	Strong transcription	NHDF-Ad	bronchial
15	chr4:87555800-87557600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr4:87555800-87557800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:87555800-87557800	Strong transcription	NHEK	skin
18	chr4:87555800-87558000	Weak transcription	NHLF	lung
19	chr4:87555800-87567600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:87555800-87567800	Weak transcription	Fetal Intestine Large	intestine
21	chr4:87556000-87557400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:87556000-87557400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:87556000-87557600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:87556000-87557800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:87556000-87557800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr4:87556000-87557800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:87556000-87558000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:87556000-87558600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr4:87556200-87557600	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr4:87556200-87557600	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:87556200-87557800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:87556200-87557800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:87556200-87557800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:87556200-87570800	Weak transcription	Fetal Stomach	stomach
35	chr4:87556400-87557600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:87556400-87557800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr4:87556400-87557800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:87556400-87557800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
39	chr4:87556600-87557600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:87556600-87557800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr4:87556600-87557800	Strong transcription	Ovary	ovary
42	chr4:87556800-87557600	Strong transcription	Brain Cingulate Gyrus	brain
43	chr4:87556800-87557600	Strong transcription	Brain Hippocampus Middle	brain
44	chr4:87556800-87557800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr4:87556800-87558000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:87556800-87558600	Weak transcription	Fetal Heart	heart
47	chr4:87557000-87557600	Strong transcription	HMEC	breast
48	chr4:87557000-87557800	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr4:87557200-87557400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:87557200-87557600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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