Variant report

Variant	rs34136919
Chromosome Location	chr3:48345681-48345682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12633518	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34146962	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34373799	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60305502	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs71323398	0.94[AMR][1000 genomes]
rs73831563	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73831566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834683	chr3:48301504-48493261	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48343800-48345800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:48343800-48346400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:48343800-48346800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:48343800-48346800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:48344000-48345800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:48344000-48346000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:48344000-48346600	Weak transcription	Fetal Brain Female	brain
8	chr3:48344000-48347600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:48344000-48347800	Weak transcription	Primary B cells from cord blood	blood
10	chr3:48344000-48348000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:48344000-48348000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:48344000-48348200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr3:48344000-48348200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:48344200-48347000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:48344200-48348000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:48344200-48348000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:48344800-48345800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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