Variant report

Variant	rs71323398
Chromosome Location	chr3:48375344-48375345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11924352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12633518	0.82[AMR][1000 genomes]
rs34136919	0.94[AMR][1000 genomes]
rs34146962	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34373799	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60305502	0.82[AMR][1000 genomes]
rs73831566	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7642363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834683	chr3:48301504-48493261	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv967015	chr3:48370774-48381957	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs71323398	ZNF589	cis	Whole Blood	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48372200-48377600	Enhancers	Placenta	Placenta
2	chr3:48374000-48376200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:48374000-48377400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr3:48374400-48375400	Active TSS	Primary B cells from cord blood	blood
5	chr3:48374400-48375800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:48374400-48375800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr3:48374400-48377600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:48375000-48375600	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr3:48375000-48376600	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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