Variant report

Variant	rs34150698
Chromosome Location	chr6:37349066-37349067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37348994..37349906-chr6:37457240..37457994,2	K562	blood:
2	chr6:37347312..37349865-chr6:37356233..37358179,2	K562	blood:
3	chr6:37343897..37346068-chr6:37346571..37349453,3	K562	blood:
4	chr6:37347893..37350321-chr6:37453148..37456084,2	K562	blood:
5	chr6:37348929..37349912-chr6:37452692..37453217,3	K562	blood:
6	chr6:37349041..37349984-chr6:37659855..37660388,2	K562	blood:
7	chr14:37411357..37412009-chr6:37348974..37349634,2	MCF-7	breast:
8	chr6:37348034..37349809-chr6:37450767..37452379,2	K562	blood:
9	chr6:37348008..37350408-chr6:37358756..37360688,2	K562	blood:
10	chr6:37348302..37351113-chr6:37394191..37396575,2	K562	blood:
11	chr6:37321746..37325231-chr6:37348140..37351818,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112130	Chromatin interaction

rs_ID	r²[population]
rs6901331	1.00[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs34150698	CPNE5,LOC100131043	cis	brain	BrainEAC

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37323000-37351400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37323400-37349800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:37323400-37356800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:37328000-37360800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:37328000-37361800	Strong transcription	Dnd41	blood
7	chr6:37328600-37361200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:37334400-37363200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:37334600-37352600	Strong transcription	Primary T cells from cord blood	blood
10	chr6:37334600-37352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:37334600-37353000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:37335400-37352400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:37335600-37351600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:37336000-37351600	Strong transcription	Stomach Smooth Muscle	stomach
15	chr6:37337200-37353000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:37337400-37357000	Weak transcription	Stomach Mucosa	stomach
17	chr6:37337400-37362600	Weak transcription	Psoas Muscle	Psoas
18	chr6:37337600-37352000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:37337600-37354000	Weak transcription	Right Ventricle	heart
20	chr6:37337600-37361000	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:37337800-37353000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:37338600-37349400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:37339200-37358400	Weak transcription	Small Intestine	intestine
26	chr6:37339200-37361000	Weak transcription	Fetal Brain Male	brain
27	chr6:37339600-37349200	Weak transcription	Aorta	Aorta
28	chr6:37339600-37352000	Weak transcription	Colonic Mucosa	Colon
29	chr6:37339600-37354000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:37339600-37358600	Weak transcription	Gastric	stomach
31	chr6:37339800-37349600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:37339800-37349800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:37339800-37355200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:37339800-37358200	Weak transcription	Pancreas	Pancrea
35	chr6:37339800-37361400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:37340200-37350600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:37340400-37358800	Weak transcription	Fetal Kidney	kidney
38	chr6:37341200-37352600	Strong transcription	Fetal Muscle Leg	muscle
39	chr6:37341400-37359400	Strong transcription	Fetal Muscle Trunk	muscle
40	chr6:37342000-37351400	Strong transcription	Hela-S3	cervix
41	chr6:37342000-37352800	Strong transcription	Duodenum Mucosa	Duodenum
42	chr6:37342200-37349800	Weak transcription	Brain Angular Gyrus	brain
43	chr6:37342200-37351000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:37342200-37351000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:37342200-37352600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:37342200-37353000	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:37342200-37353000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr6:37342400-37350600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:37342400-37362000	Strong transcription	Adipose Nuclei	Adipose
50	chr6:37342600-37358200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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