Variant report

Variant	rs6901331
Chromosome Location	chr6:37439365-37439366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:37439354-37439394	K562	blood:	n/a	n/a
2	POLR2A	chr6:37439102-37439615	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:37439300-37439672	GM12878	blood:	n/a	n/a
4	POLR2A	chr6:37438965-37439390	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37391896..37393452-chr6:37438457..37441158,2	K562	blood:
2	chr6:37391746..37394017-chr6:37438131..37441075,2	MCF-7	breast:

Variant related genes	Relation type
CMTR1	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10947674	1.00[CHB][hapmap]
rs11967427	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs34150698	1.00[ASN][1000 genomes]
rs7749537	1.00[AFR][1000 genomes]
rs7758415	1.00[AFR][1000 genomes]
rs7771002	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37424600-37451600	Strong transcription	Fetal Thymus	thymus
2	chr6:37425600-37440200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:37427400-37442800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:37428800-37440800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:37429000-37439800	Weak transcription	Fetal Heart	heart
6	chr6:37430000-37439600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:37430800-37442200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:37431000-37440000	Weak transcription	Fetal Brain Male	brain
9	chr6:37431200-37440000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:37431400-37439400	Weak transcription	NHLF	lung
11	chr6:37431600-37439600	Weak transcription	A549	lung
12	chr6:37431600-37440000	Weak transcription	NHDF-Ad	bronchial
13	chr6:37431600-37440400	Weak transcription	Psoas Muscle	Psoas
14	chr6:37431800-37447200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:37432200-37439400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:37435800-37452000	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr6:37436200-37457200	Strong transcription	Primary T cells from cord blood	blood
18	chr6:37436400-37448600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:37436400-37454600	Strong transcription	Thymus	Thymus
20	chr6:37436600-37452000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:37436600-37452000	Strong transcription	Fetal Lung	lung
22	chr6:37436800-37448600	Strong transcription	Primary B cells from cord blood	blood
23	chr6:37436800-37451800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:37436800-37452200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:37437000-37451800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:37437200-37439600	Strong transcription	Fetal Muscle Leg	muscle
27	chr6:37437400-37448600	Strong transcription	Fetal Stomach	stomach
28	chr6:37437400-37454400	Strong transcription	Dnd41	blood
29	chr6:37437600-37440000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:37437600-37440200	Strong transcription	HSMM	muscle
31	chr6:37437600-37451400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:37437600-37451800	Strong transcription	Primary B cells from peripheral blood	blood
33	chr6:37437600-37452000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:37437800-37439400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:37437800-37444800	Strong transcription	GM12878-XiMat	blood
36	chr6:37437800-37451600	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:37438000-37451600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:37438000-37454600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:37438200-37449000	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr6:37438200-37449600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:37438200-37451600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:37438200-37451600	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr6:37438200-37451800	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:37438200-37452000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:37438200-37452000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr6:37438200-37452400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:37438200-37454400	Strong transcription	Placenta	Placenta
48	chr6:37438400-37439600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:37438400-37439800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr6:37438400-37440400	Strong transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links