Variant report

Variant	rs34154432
Chromosome Location	chr3:160395392-160395393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160392050..160395141-chr3:160395142..160398552,4	K562	blood:
2	chr3:160395173..160398062-chr3:160414143..160415987,2	K562	blood:

Variant related genes	Relation type
ENSG00000207084	Chromatin interaction
ENSG00000179674	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16831336	1.00[YRI][hapmap]
rs59720963	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv877703	chr3:160325458-160398885	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160389400-160395400	Weak transcription	Small Intestine	intestine
2	chr3:160393400-160395800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:160393400-160395800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:160393400-160397000	Enhancers	HMEC	breast
5	chr3:160393400-160397200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:160393400-160397400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:160394200-160397400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:160394400-160396800	Enhancers	HUVEC	blood vessel
9	chr3:160394400-160397400	Active TSS	Stomach Mucosa	stomach
10	chr3:160394600-160395600	Flanking Active TSS	Hela-S3	cervix
11	chr3:160394600-160396200	Flanking Active TSS	A549	lung
12	chr3:160394600-160397400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:160394800-160395400	Enhancers	HSMMtube	muscle
14	chr3:160394800-160395600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:160394800-160395600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:160394800-160395600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:160394800-160395600	Enhancers	NHDF-Ad	bronchial
18	chr3:160394800-160395600	Enhancers	Osteobl	bone
19	chr3:160394800-160395800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:160394800-160396400	Enhancers	Fetal Kidney	kidney
21	chr3:160394800-160396400	Enhancers	NHLF	lung
22	chr3:160394800-160396600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:160394800-160396600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:160394800-160397800	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr3:160395000-160395400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:160395000-160395600	Flanking Active TSS	NHEK	skin
27	chr3:160395000-160395800	Flanking Active TSS	Fetal Intestine Small	intestine
28	chr3:160395000-160395800	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr3:160395000-160395800	Flanking Active TSS	NH-A	brain
30	chr3:160395000-160396600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:160395000-160396600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:160395000-160397200	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr3:160395000-160397400	Active TSS	Colonic Mucosa	Colon
34	chr3:160395000-160397600	Active TSS	Rectal Mucosa Donor 31	rectum
35	chr3:160395000-160398000	Active TSS	Duodenum Mucosa	Duodenum
36	chr3:160395200-160395400	Enhancers	H9 Cell Line	embryonic stem cell
37	chr3:160395200-160395400	Enhancers	HSMM	muscle
38	chr3:160395200-160395600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr3:160395200-160395600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr3:160395200-160395600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr3:160395200-160395600	Flanking Active TSS	Fetal Intestine Large	intestine
42	chr3:160395200-160395600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr3:160395200-160395600	Active TSS	Gastric	stomach
44	chr3:160395200-160395800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr3:160395200-160395800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:160395200-160395800	Flanking Active TSS	Fetal Stomach	stomach
47	chr3:160395200-160395800	Enhancers	Placenta Amnion	Placenta Amnion
48	chr3:160395200-160396200	Enhancers	HepG2	liver
49	chr3:160395200-160396800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:160395200-160397000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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