Variant report

Variant	rs16831336
Chromosome Location	chr3:160391591-160391592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2886889	0.99[ASN][1000 genomes]
rs34154432	1.00[YRI][hapmap]
rs62272221	0.89[ASN][1000 genomes]
rs62272229	0.97[ASN][1000 genomes]
rs6763770	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6765579	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv877703	chr3:160325458-160398885	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160385200-160395000	Weak transcription	Colonic Mucosa	Colon
2	chr3:160386200-160393400	Weak transcription	Fetal Intestine Large	intestine
3	chr3:160389400-160393400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:160389400-160395200	Weak transcription	Pancreas	Pancrea
5	chr3:160389400-160395400	Weak transcription	Small Intestine	intestine
6	chr3:160390600-160393600	Enhancers	Stomach Mucosa	stomach
7	chr3:160390800-160392000	Enhancers	HepG2	liver
8	chr3:160391200-160391600	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr3:160391400-160391800	Enhancers	A549	lung
10	chr3:160391400-160392600	Enhancers	Fetal Intestine Small	intestine
11	chr3:160391400-160392800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr3:160391400-160394000	Enhancers	Liver	Liver
13	chr3:160391400-160395200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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