Variant report

Variant	rs6765579
Chromosome Location	chr3:160385610-160385611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160378138..160380305-chr3:160382789..160386961,3	K562	blood:
2	chr3:160379485..160381403-chr3:160384390..160388251,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16831335	0.91[ASW][hapmap]
rs16831336	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2886889	0.99[ASN][1000 genomes]
rs62272221	0.89[ASN][1000 genomes]
rs62272229	0.97[ASN][1000 genomes]
rs6763770	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv877703	chr3:160325458-160398885	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160383400-160386400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:160383600-160385800	Enhancers	HMEC	breast
3	chr3:160383600-160385800	Enhancers	Osteobl	bone
4	chr3:160383600-160386200	Enhancers	Fetal Intestine Large	intestine
5	chr3:160383600-160386200	Enhancers	Fetal Intestine Small	intestine
6	chr3:160383600-160386600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:160383800-160385800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:160383800-160386400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr3:160384000-160386400	Enhancers	GM12878-XiMat	blood
10	chr3:160384000-160386400	Enhancers	Hela-S3	cervix
11	chr3:160384000-160387800	Weak transcription	Small Intestine	intestine
12	chr3:160384000-160389200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:160384200-160385800	Enhancers	NH-A	brain
14	chr3:160384800-160385800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:160384800-160385800	Enhancers	HUVEC	blood vessel
16	chr3:160384800-160385800	Enhancers	NHEK	skin
17	chr3:160384800-160386200	Enhancers	A549	lung
18	chr3:160384800-160386400	Enhancers	Stomach Mucosa	stomach
19	chr3:160385200-160385800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:160385200-160386000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:160385200-160386400	Enhancers	Duodenum Mucosa	Duodenum
22	chr3:160385200-160395000	Weak transcription	Colonic Mucosa	Colon
23	chr3:160385400-160385800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:160385400-160386400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr3:160385400-160391200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:160385600-160388800	Weak transcription	NHLF	lung
27	chr3:160385600-160389000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:160385600-160389200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links