Variant report

Variant	rs34164886
Chromosome Location	chr7:108165077-108165078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:108163432..108166048-chr7:108192942..108195517,2	K562	blood:
2	chr7:108139312..108141712-chr7:108164785..108166455,2	K562	blood:
3	chr7:108159403..108171484-chr7:108200740..108214365,45	K562	blood:
4	chr7:108094270..108096861-chr7:108164817..108167585,2	MCF-7	breast:
5	chr7:108163986..108165918-chr7:108175176..108176794,2	MCF-7	breast:
6	chr7:108164038..108167949-chr7:108208349..108211666,8	MCF-7	breast:
7	chr7:108162967..108170259-chr7:108208242..108216228,25	MCF-7	breast:
8	chr7:108163136..108166047-chr7:108214620..108217426,3	K562	blood:
9	chr7:108163122..108173185-chr7:108207236..108216619,40	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135241	Chromatin interaction
ENSG00000091129	Chromatin interaction
ENSG00000177683	Chromatin interaction
ENSG00000128590	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11971386	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11983802	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11983842	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12530879	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12538539	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12540029	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12705474	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13239792	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872576	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16872577	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34459886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34771129	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34827770	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34915298	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34959248	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35220845	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35444439	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3752639	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3763460	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763463	0.91[EUR][1000 genomes]
rs60117684	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6964631	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6980319	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71568523	0.89[EUR][1000 genomes]
rs71568529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71568531	0.92[ASN][1000 genomes]
rs71568533	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786180	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9641410	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108113800-108165800	Weak transcription	Gastric	stomach
2	chr7:108149400-108165600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:108153600-108165800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:108158800-108165600	Weak transcription	Aorta	Aorta
5	chr7:108159000-108165200	Weak transcription	Fetal Brain Female	brain
6	chr7:108160600-108165200	Weak transcription	HSMMtube	muscle
7	chr7:108160600-108165600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:108161600-108165200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr7:108161600-108165200	Enhancers	Liver	Liver
10	chr7:108161600-108165200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:108161800-108165200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr7:108162000-108165800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr7:108162200-108165200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr7:108162400-108165800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:108162600-108165400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr7:108162600-108165600	Enhancers	Primary T cells fromperipheralblood	blood
17	chr7:108162800-108165600	Enhancers	Primary T cells from cord blood	blood
18	chr7:108163000-108165200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:108163000-108165200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:108163000-108165200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:108163000-108165400	Enhancers	Fetal Intestine Large	intestine
22	chr7:108163000-108165600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr7:108163000-108165600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr7:108163000-108165600	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr7:108163000-108165600	Enhancers	Fetal Intestine Small	intestine
26	chr7:108163200-108165200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr7:108163200-108165200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:108163200-108165200	Enhancers	Fetal Lung	lung
29	chr7:108163400-108165200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr7:108163400-108166000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:108163600-108165200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:108163600-108165200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr7:108163600-108165200	Enhancers	NHDF-Ad	bronchial
34	chr7:108163600-108165800	Weak transcription	Ovary	ovary
35	chr7:108163600-108166000	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr7:108163800-108165200	Enhancers	Adipose Nuclei	Adipose
37	chr7:108163800-108165200	Enhancers	Duodenum Mucosa	Duodenum
38	chr7:108163800-108165400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:108163800-108165600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr7:108163800-108165600	Enhancers	Fetal Muscle Leg	muscle
41	chr7:108163800-108167400	Active TSS	Brain Cingulate Gyrus	brain
42	chr7:108164000-108165200	Enhancers	Fetal Brain Male	brain
43	chr7:108164000-108165200	Enhancers	Placenta	Placenta
44	chr7:108164000-108165400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:108164000-108165400	Enhancers	Small Intestine	intestine
46	chr7:108164000-108165600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr7:108164000-108165600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr7:108164000-108165600	Enhancers	Fetal Heart	heart
49	chr7:108164000-108165600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr7:108164200-108165200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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