Variant report

Variant	rs7786180
Chromosome Location	chr7:108106860-108106861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108092926..108094617-chr7:108105069..108107356,2	K562	blood:
2	chr7:108094678..108098834-chr7:108103652..108107753,7	MCF-7	breast:
3	chr7:107992642..107995000-chr7:108106224..108108684,2	MCF-7	breast:
4	chr7:108101662..108103769-chr7:108105980..108107741,2	MCF-7	breast:
5	chr7:108096789..108098872-chr7:108105981..108108747,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091129	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10953572	0.80[EUR][1000 genomes]
rs10953573	0.80[EUR][1000 genomes]
rs11971386	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11977071	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11983802	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983842	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530879	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536929	0.80[EUR][1000 genomes]
rs12538539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540029	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705474	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13224588	0.81[ASN][1000 genomes]
rs13239792	0.90[ASN][1000 genomes]
rs16872576	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16872577	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17134769	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34164886	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34459886	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34771129	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34827770	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34915298	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34959248	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35220845	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35444439	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35687881	0.80[EUR][1000 genomes]
rs3752639	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763460	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3763463	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60117684	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6964631	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980319	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71568523	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71568524	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71568525	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71568529	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71568531	0.82[ASN][1000 genomes]
rs71568533	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9641410	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641411	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv967438	chr7:108105134-108108283	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv2753284	chr7:108105345-108130214	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108097200-108118000	Weak transcription	Aorta	Aorta
2	chr7:108098200-108140600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:108100800-108108800	Weak transcription	HUVEC	blood vessel
4	chr7:108101000-108119200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:108101400-108116800	Weak transcription	Osteobl	bone
6	chr7:108101800-108108400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:108102400-108129600	Weak transcription	Pancreas	Pancrea
8	chr7:108102400-108137000	Weak transcription	NH-A	brain
9	chr7:108102400-108143600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:108102600-108116000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:108102600-108118200	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:108102800-108107000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:108102800-108111000	Weak transcription	HSMM	muscle
14	chr7:108102800-108111200	Weak transcription	Adipose Nuclei	Adipose
15	chr7:108102800-108126400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:108102800-108158400	Weak transcription	HSMMtube	muscle
17	chr7:108103000-108111200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:108103200-108115200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:108104200-108111200	Weak transcription	Left Ventricle	heart
20	chr7:108104400-108116400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:108104800-108117400	Weak transcription	Dnd41	blood
22	chr7:108105000-108116000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr7:108105600-108117800	Weak transcription	Thymus	Thymus
24	chr7:108105800-108111000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr7:108105800-108158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr7:108106000-108116800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr7:108106200-108108600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:108106200-108150800	Weak transcription	NHLF	lung
29	chr7:108106400-108113000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr7:108106400-108117200	Weak transcription	Primary T cells from cord blood	blood
31	chr7:108106600-108127600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr7:108106800-108130000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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