Variant report

Variant	rs11977071
Chromosome Location	chr7:108124232-108124233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108118558..108121444-chr7:108121859..108124782,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10953572	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10953573	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11971386	0.83[EUR][1000 genomes]
rs11983802	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11983842	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12530879	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12536929	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12538539	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12540029	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13224588	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16872576	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs16872577	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs17134769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34915298	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35220845	0.83[EUR][1000 genomes]
rs35444439	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35687881	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3752639	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3763460	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs3763463	0.80[EUR][1000 genomes]
rs6964631	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6980319	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71568524	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71568525	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7786180	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9641410	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9641411	1.00[CEU][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	esv2753284	chr7:108105345-108130214	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108098200-108140600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:108102400-108129600	Weak transcription	Pancreas	Pancrea
3	chr7:108102400-108137000	Weak transcription	NH-A	brain
4	chr7:108102400-108143600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:108102800-108126400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:108102800-108158400	Weak transcription	HSMMtube	muscle
7	chr7:108105800-108158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:108106200-108150800	Weak transcription	NHLF	lung
9	chr7:108106600-108127600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr7:108106800-108130000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr7:108107600-108141000	Weak transcription	Spleen	Spleen
12	chr7:108109000-108126400	Weak transcription	HUVEC	blood vessel
13	chr7:108109000-108129000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:108109000-108136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:108109000-108141400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:108109000-108162400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:108109600-108127600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:108109600-108140600	Weak transcription	Esophagus	oesophagus
19	chr7:108109600-108143400	Weak transcription	GM12878-XiMat	blood
20	chr7:108110200-108127800	Weak transcription	Fetal Brain Female	brain
21	chr7:108111000-108137800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr7:108111400-108142200	Strong transcription	Liver	Liver
23	chr7:108111400-108154800	Weak transcription	NHEK	skin
24	chr7:108111600-108138400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:108111600-108142600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:108111800-108143600	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr7:108113200-108157000	Weak transcription	Psoas Muscle	Psoas
28	chr7:108113600-108129800	Weak transcription	Hela-S3	cervix
29	chr7:108113600-108140000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:108113800-108150800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr7:108113800-108165800	Weak transcription	Gastric	stomach
32	chr7:108114000-108129800	Weak transcription	Fetal Heart	heart
33	chr7:108114000-108139800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr7:108114000-108165000	Weak transcription	Colonic Mucosa	Colon
35	chr7:108114400-108160000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:108114600-108132000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr7:108114800-108134800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr7:108115200-108151800	Weak transcription	NHDF-Ad	bronchial
39	chr7:108115800-108132000	Weak transcription	A549	lung
40	chr7:108116000-108125800	Strong transcription	Primary B cells from peripheral blood	blood
41	chr7:108116400-108141400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:108117200-108150600	Weak transcription	Colon Smooth Muscle	Colon
43	chr7:108117200-108151800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr7:108117800-108126400	Weak transcription	Osteobl	bone
45	chr7:108117800-108164200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr7:108118200-108129200	Weak transcription	K562	blood
47	chr7:108119200-108128200	Weak transcription	Fetal Stomach	stomach
48	chr7:108119200-108129400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:108119200-108157600	Weak transcription	Brain Germinal Matrix	brain
50	chr7:108119600-108124800	Weak transcription	HSMM	muscle

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