Variant report

Variant	rs35687881
Chromosome Location	chr7:108100703-108100704
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr7:108100252-108100885	A549	lung:	n/a	chr7:108100590-108100609
2	RAD21	chr7:108100355-108100764	ECC-1	luminal epithelium:	n/a	chr7:108100590-108100609
3	CTCF	chr7:108100560-108100710	A549	lung:	n/a	chr7:108100609-108100617
4	MYC	chr7:108100463-108100735	NB4	blood:	n/a	n/a
5	CTCF	chr7:108100306-108100767	MCF-7	breast:	n/a	chr7:108100609-108100617
6	RAD21	chr7:108100279-108100909	MCF-7	breast:	n/a	chr7:108100590-108100609
7	EP300	chr7:108099888-108103052	SK-N-SH	brain:	n/a	chr7:108102354-108102363 chr7:108100633-108100647 chr7:108100695-108100709 chr7:108099988-108100002 chr7:108100689-108100703 chr7:108100635-108100649 chr7:108100701-108100715
8	RAD21	chr7:108100417-108100822	H1-hESC	embryonic stem cell:	n/a	chr7:108100590-108100609
9	CTCF	chr7:108100560-108100710	GM12874	blood:	n/a	chr7:108100609-108100617
10	CTCF	chr7:108100376-108101004	GM12878	blood:	n/a	chr7:108100979-108100987 chr7:108100609-108100617
11	RAD21	chr7:108099865-108103108	SK-N-SH	brain:	n/a	chr7:108100590-108100609
12	CTCF	chr7:108100495-108100703	GM10248	blood:	n/a	chr7:108100609-108100617
13	ZNF384	chr7:108100551-108100749	GM12878	blood:	n/a	n/a
14	CTCF	chr7:108100485-108100742	LNCaP	prostate:	n/a	chr7:108100609-108100617
15	RAD21	chr7:108100361-108100765	GM12878	blood:	n/a	chr7:108100590-108100609
16	CTCF	chr7:108100391-108100706	H1-hESC	embryonic stem cell:	n/a	chr7:108100609-108100617
17	CTCF	chr7:108100472-108100744	GM12878	blood:	n/a	chr7:108100609-108100617
18	RAD21	chr7:108100412-108100775	H1-hESC	embryonic stem cell:	n/a	chr7:108100590-108100609
19	EBF1	chr7:108100469-108100731	GM12878	blood:	n/a	n/a
20	ZNF143	chr7:108100410-108100775	GM12878	blood:	n/a	n/a
21	CTCF	chr7:108100479-108100719	LNCaP	prostate:	n/a	chr7:108100609-108100617
22	SMC3	chr7:108099880-108100981	SK-N-SH	brain:	n/a	n/a
23	CTCF	chr7:108100560-108100710	AG09309	skin:	n/a	chr7:108100609-108100617
24	CTCF	chr7:108100317-108100711	HCT-116	colon:	n/a	chr7:108100609-108100617
25	CTCF	chr7:108100560-108100710	HMEC	breast:	n/a	chr7:108100609-108100617
26	SMC3	chr7:108100365-108100811	HepG2	liver:	n/a	n/a
27	CTCF	chr7:108100294-108100817	A549	lung:	n/a	chr7:108100609-108100617
28	CTCF	chr7:108100479-108100738	Spleen_OC	spleen:	n/a	chr7:108100609-108100617
29	RAD21	chr7:108100394-108100778	HepG2	liver:	n/a	chr7:108100590-108100609
30	ZNF384	chr7:108100434-108100830	K562	blood:	n/a	n/a
31	CTCF	chr7:108100439-108100806	K562	blood:	n/a	chr7:108100609-108100617
32	SMC3	chr7:108100383-108100790	Hela-S3	cervix:	n/a	n/a
33	SMC3	chr7:108100366-108100860	GM12878	blood:	n/a	n/a
34	RAD21	chr7:108100415-108100774	HepG2	liver:	n/a	chr7:108100590-108100609
35	CTCF	chr7:108100560-108100710	GM12865	blood:	n/a	chr7:108100609-108100617
36	CTCF	chr7:108100441-108100722	HepG2	liver:	n/a	chr7:108100609-108100617
37	CTCF	chr7:108100473-108100733	Gliobla	brain:	n/a	chr7:108100609-108100617
38	TBL1XR1	chr7:108100484-108100718	GM12878	blood:	n/a	n/a
39	CTCF	chr7:108100417-108100812	IMR90	lung:	n/a	chr7:108100609-108100617
40	CTCF	chr7:108100560-108100710	Hela-S3	cervix:	n/a	chr7:108100609-108100617
41	RAD21	chr7:108100325-108100909	HCT-116	colon:	n/a	chr7:108100590-108100609
42	RAD21	chr7:108100410-108100766	A549	lung:	n/a	chr7:108100590-108100609
43	CTCF	chr7:108100560-108100710	HRPEpiC	eye:	n/a	chr7:108100609-108100617
44	MAZ	chr7:108100424-108100726	K562	blood:	n/a	n/a
45	CTCF	chr7:108100439-108100809	K562	blood:	n/a	chr7:108100609-108100617
46	RAD21	chr7:108100408-108100809	H1-hESC	embryonic stem cell:	n/a	chr7:108100590-108100609
47	CTCF	chr7:108100440-108100755	K562	blood:	n/a	chr7:108100609-108100617
48	CTCF	chr7:108100580-108100730	HL-60	blood:	n/a	chr7:108100609-108100617
49	RAD21	chr7:108100368-108100890	A549	lung:	n/a	chr7:108100590-108100609
50	RAD21	chr7:108100368-108100803	Hela-S3	cervix:	n/a	chr7:108100590-108100609

No.	Distal block	Cell Line	Cell type
1	chr7:107821280..107822047-chr7:108100171..108100791,3	MCF-7	breast:
2	chr7:108090194..108091696-chr7:108099610..108101665,2	K562	blood:
3	chr7:108094254..108096481-chr7:108100316..108102970,2	K562	blood:
4	chr7:107821293..107822074-chr7:108100164..108101119,3	MCF-7	breast:
5	chr7:108092620..108097023-chr7:108100316..108104112,6	K562	blood:
6	chr7:108095530..108098596-chr7:108100575..108103691,3	MCF-7	breast:

Variant related genes	Relation type
NRCAM	TF binding region
ENSG00000091129	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10953572	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953573	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971386	0.80[EUR][1000 genomes]
rs11977071	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12530879	0.80[EUR][1000 genomes]
rs12536929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538539	0.80[EUR][1000 genomes]
rs12540029	0.80[EUR][1000 genomes]
rs13224588	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16872576	0.80[EUR][1000 genomes]
rs16872577	0.80[EUR][1000 genomes]
rs17134769	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35220845	0.80[EUR][1000 genomes]
rs3752639	0.80[EUR][1000 genomes]
rs3763463	0.83[EUR][1000 genomes]
rs6964631	0.80[EUR][1000 genomes]
rs6980319	0.80[EUR][1000 genomes]
rs71568523	0.81[EUR][1000 genomes]
rs71568524	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71568525	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7786180	0.80[EUR][1000 genomes]
rs9641411	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108097200-108118000	Weak transcription	Aorta	Aorta
2	chr7:108097800-108101400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:108097800-108101600	Weak transcription	Pancreas	Pancrea
4	chr7:108097800-108103200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:108098000-108101200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:108098200-108140600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:108100000-108101000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:108100000-108101000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:108100000-108101400	Enhancers	A549	lung
10	chr7:108100000-108102800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:108100400-108100800	Enhancers	HUVEC	blood vessel
12	chr7:108100400-108101000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:108100400-108102200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:108100400-108103000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:108100400-108106600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr7:108100600-108100800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr7:108100600-108100800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:108100600-108100800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr7:108100600-108100800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:108100600-108100800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr7:108100600-108100800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr7:108100600-108101000	Enhancers	Primary T cells from cord blood	blood
23	chr7:108100600-108101400	Enhancers	Osteobl	bone

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