Variant report

Variant	rs34166099
Chromosome Location	chr4:102778580-102778581
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102778161..102781257-chr4:102784070..102788412,3	MCF-7	breast:
2	chr4:102777435..102779850-chr4:102786990..102788532,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11930376	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11931658	0.84[ASN][1000 genomes]
rs11932972	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11933157	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11934097	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11939568	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11940934	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11942437	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13101528	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13103438	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13116542	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13126550	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13142517	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1363067	0.85[ASN][1000 genomes]
rs2851334	0.85[ASN][1000 genomes]
rs34208976	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34321727	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34814827	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35201947	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35476121	0.83[EUR][1000 genomes]
rs35860418	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4345184	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4698971	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4698975	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698977	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4698978	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4698979	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60448423	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6830565	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7662572	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9790475	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2757074	chr4:102772861-102933949	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34166099	BANK1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102757400-102784600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:102773200-102786200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:102774000-102786800	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr4:102774400-102783400	Genic enhancers	Primary B cells from cord blood	blood
5	chr4:102776800-102783800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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