Variant report

Variant	rs34166395
Chromosome Location	chr14:68542709-68542710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68542366..68543945-chr14:69261345..69263319,2	MCF-7	breast:
2	chr14:68541688..68545482-chr14:68601842..68606347,5	MCF-7	breast:
3	chr14:68542242..68544214-chr14:68550755..68552460,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs36069478	1.00[AMR][1000 genomes]
rs36111142	1.00[AMR][1000 genomes]
rs4346147	1.00[AMR][1000 genomes]
rs73280500	1.00[AMR][1000 genomes]
rs73282421	1.00[AMR][1000 genomes]
rs73282457	1.00[AMR][1000 genomes]
rs73284217	1.00[AMR][1000 genomes]
rs73284218	1.00[AMR][1000 genomes]
rs73284237	1.00[AMR][1000 genomes]
rs73284250	1.00[AMR][1000 genomes]
rs73284252	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68544000	Weak transcription	Aorta	Aorta
2	chr14:68532400-68552400	Weak transcription	Ovary	ovary
3	chr14:68538200-68543600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:68541200-68543400	Enhancers	Stomach Mucosa	stomach
5	chr14:68541400-68542800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr14:68541400-68542800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:68541400-68542800	Enhancers	Esophagus	oesophagus
8	chr14:68541600-68542800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr14:68541600-68542800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:68541600-68542800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:68541600-68542800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr14:68541600-68542800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr14:68541600-68542800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:68541600-68542800	Enhancers	Fetal Thymus	thymus
15	chr14:68541600-68543000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr14:68541600-68543000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:68541600-68543000	Enhancers	HepG2	liver
18	chr14:68541600-68547200	Weak transcription	Fetal Lung	lung
19	chr14:68541800-68542800	Weak transcription	A549	lung
20	chr14:68541800-68544800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr14:68541800-68547200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:68542000-68542800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr14:68542000-68543200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:68542000-68547000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:68542200-68542800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:68542200-68542800	Enhancers	Left Ventricle	heart
27	chr14:68542200-68543000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:68542200-68544000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:68542200-68547200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr14:68542200-68555000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr14:68542400-68542800	Enhancers	Brain Hippocampus Middle	brain
32	chr14:68542400-68544000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:68542400-68546800	Weak transcription	Colon Smooth Muscle	Colon
34	chr14:68542600-68542800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:68542600-68542800	Enhancers	Brain Germinal Matrix	brain
36	chr14:68542600-68544000	Enhancers	Fetal Intestine Small	intestine
37	chr14:68542600-68546600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr14:68542600-68546600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:68542600-68547000	Weak transcription	Gastric	stomach
40	chr14:68542600-68548000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:68542600-68551000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr14:68542600-68552400	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links