Variant report

Variant	rs73284237
Chromosome Location	chr14:68496516-68496517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs34166395	1.00[AMR][1000 genomes]
rs36069478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36111142	1.00[AMR][1000 genomes]
rs4346147	1.00[AMR][1000 genomes]
rs73280500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282497	1.00[AFR][1000 genomes]
rs73284217	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284252	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68488400-68496800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68494800-68506200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:68495600-68497600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
4	chr14:68495600-68498600	Weak transcription	Ovary	ovary
5	chr14:68495600-68500200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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