Variant report

Variant	rs73282497
Chromosome Location	chr14:68454192-68454193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68439178..68441546-chr14:68451372..68454221,2	MCF-7	breast:
2	chr14:68452792..68454814-chr14:68457617..68459136,2	MCF-7	breast:
3	chr14:68442494..68447926-chr14:68448163..68454311,7	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs36069478	1.00[AFR][1000 genomes]
rs73280500	1.00[AFR][1000 genomes]
rs73282421	1.00[AFR][1000 genomes]
rs73282457	1.00[AFR][1000 genomes]
rs73284217	0.88[AFR][1000 genomes]
rs73284218	1.00[AFR][1000 genomes]
rs73284237	1.00[AFR][1000 genomes]
rs73284250	1.00[AFR][1000 genomes]
rs73284252	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68442600-68454400	Weak transcription	Fetal Kidney	kidney
2	chr14:68445800-68454600	Weak transcription	Ovary	ovary
3	chr14:68449800-68454400	Weak transcription	HMEC	breast
4	chr14:68450200-68465400	Weak transcription	HepG2	liver
5	chr14:68450600-68457000	Weak transcription	Stomach Mucosa	stomach
6	chr14:68451200-68455000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:68451800-68455000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:68452200-68454400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:68452600-68455000	Enhancers	NHLF	lung
10	chr14:68452600-68455200	Enhancers	Fetal Stomach	stomach
11	chr14:68452800-68454200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:68452800-68454600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:68452800-68454600	Enhancers	Osteobl	bone
14	chr14:68453000-68454200	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:68453000-68454400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:68453000-68454400	Enhancers	Fetal Lung	lung
17	chr14:68453000-68456000	Enhancers	Rectal Smooth Muscle	rectum
18	chr14:68453200-68455000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr14:68453400-68454600	Weak transcription	HSMMtube	muscle
20	chr14:68453600-68455000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr14:68453600-68455200	Enhancers	Primary hematopoietic stem cells	blood
22	chr14:68453600-68455600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr14:68453800-68454200	Weak transcription	Adipose Nuclei	Adipose
24	chr14:68453800-68454800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr14:68454000-68454400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:68454000-68454400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:68454000-68454400	Enhancers	Stomach Smooth Muscle	stomach
28	chr14:68454000-68454400	Enhancers	NH-A	brain
29	chr14:68454000-68454600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:68454000-68454600	Enhancers	NHDF-Ad	bronchial
31	chr14:68454000-68455000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:68454000-68455000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:68454000-68455000	Enhancers	HSMM	muscle
34	chr14:68454000-68455200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links