Variant report

Variant	rs34176695
Chromosome Location	chr18:29487567-29487568
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:29485958..29488048-chr18:29520164..29521790,2	K562	blood:
2	chr18:29487420..29490004-chr18:29496191..29498820,2	K562	blood:
3	chr18:29477012..29478929-chr18:29485217..29488181,2	K562	blood:
4	chr18:29486555..29488641-chr18:29494297..29496316,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11872757	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873875	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11874574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11875279	0.83[ASN][1000 genomes]
rs11876025	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11878164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34059722	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34888238	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72932147	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8083827	0.83[ASN][1000 genomes]
rs8083851	0.83[ASN][1000 genomes]
rs8084138	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085470	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8088671	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8099528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9965255	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1057229	chr18:29335175-29514265	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29406200-29518600	Weak transcription	Fetal Brain Male	brain
2	chr18:29417600-29515600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:29431800-29499000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr18:29431800-29512600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr18:29432600-29507600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:29432600-29521400	Weak transcription	Stomach Mucosa	stomach
7	chr18:29446000-29489000	Strong transcription	Fetal Thymus	thymus
8	chr18:29449200-29489000	Strong transcription	Adipose Nuclei	Adipose
9	chr18:29457000-29505800	Weak transcription	Brain Angular Gyrus	brain
10	chr18:29457200-29493200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr18:29460400-29501200	Strong transcription	Liver	Liver
12	chr18:29461400-29494200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr18:29461600-29491200	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr18:29461600-29518600	Weak transcription	Psoas Muscle	Psoas
15	chr18:29462000-29520000	Weak transcription	Fetal Heart	heart
16	chr18:29462600-29489000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr18:29463200-29490200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr18:29463400-29509200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr18:29465000-29489200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr18:29466200-29489000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr18:29466400-29490800	Strong transcription	Placenta	Placenta
22	chr18:29466800-29489000	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr18:29466800-29489000	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr18:29468200-29491000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr18:29468800-29492000	Weak transcription	Ovary	ovary
26	chr18:29469000-29489200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr18:29469000-29511400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr18:29469600-29507000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr18:29472800-29512000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr18:29473000-29489000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr18:29473200-29490200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr18:29473400-29487800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr18:29473800-29489600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr18:29473800-29490000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr18:29473800-29494800	Strong transcription	Primary B cells from cord blood	blood
36	chr18:29473800-29503400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr18:29474200-29510800	Weak transcription	NH-A	brain
38	chr18:29476000-29491200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr18:29476800-29489800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr18:29478600-29522000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr18:29479200-29489000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr18:29479400-29487800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr18:29479600-29518600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr18:29480200-29491800	Weak transcription	Esophagus	oesophagus
45	chr18:29480200-29492000	Weak transcription	Aorta	Aorta
46	chr18:29480600-29511600	Weak transcription	Pancreas	Pancrea
47	chr18:29480600-29519400	Weak transcription	Spleen	Spleen
48	chr18:29480800-29511200	Weak transcription	Hela-S3	cervix
49	chr18:29481400-29488600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr18:29481400-29511600	Weak transcription	Brain Inferior Temporal Lobe	brain

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