Variant report

Variant	rs11875279
Chromosome Location	chr18:29400520-29400521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11872757	0.83[ASN][1000 genomes]
rs11873875	0.83[ASN][1000 genomes]
rs11874574	0.83[ASN][1000 genomes]
rs11876025	0.83[ASN][1000 genomes]
rs34059722	0.83[ASN][1000 genomes]
rs34176695	0.83[ASN][1000 genomes]
rs34888238	0.83[ASN][1000 genomes]
rs72932147	0.83[ASN][1000 genomes]
rs8083827	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8083851	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8084138	0.83[ASN][1000 genomes]
rs8085470	0.83[ASN][1000 genomes]
rs8088671	0.83[ASN][1000 genomes]
rs9965255	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059078	chr18:29225522-29454980	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543675	chr18:29225522-29454980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv1057229	chr18:29335175-29514265	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv2247	chr18:29370842-29415712	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29388800-29401800	Weak transcription	Right Atrium	heart
2	chr18:29390200-29401400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:29392000-29405200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:29394400-29418200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr18:29399400-29401400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr18:29399400-29407800	Weak transcription	Placenta	Placenta
7	chr18:29399600-29409000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr18:29399800-29401200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr18:29399800-29401400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr18:29399800-29401400	Weak transcription	Fetal Intestine Small	intestine
11	chr18:29399800-29401600	Weak transcription	Adipose Nuclei	Adipose
12	chr18:29399800-29408800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr18:29399800-29409400	Weak transcription	HSMMtube	muscle
14	chr18:29400000-29401200	Weak transcription	HepG2	liver
15	chr18:29400000-29401400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr18:29400000-29401400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr18:29400000-29405000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr18:29400200-29401200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr18:29400200-29401400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr18:29400200-29401400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr18:29400200-29401600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr18:29400200-29403400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr18:29400200-29405000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr18:29400200-29415600	Weak transcription	Brain Angular Gyrus	brain

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