The 2.0 version of rSNPBase

Variant report

Variant rs34177135
Chromosome Location chr6:72110520-72110521
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:72098400-72117200 Weak transcription Pancreas Pancrea
2 chr6:72099600-72114400 Weak transcription Fetal Intestine Large intestine
3 chr6:72100200-72113200 Weak transcription Fetal Intestine Small intestine
4 chr6:72101000-72113200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr6:72101600-72111400 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr6:72103400-72114400 Weak transcription Small Intestine intestine
7 chr6:72104000-72122000 Weak transcription Fetal Stomach stomach
8 chr6:72104200-72111800 Weak transcription Fetal Heart heart
9 chr6:72105000-72113000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr6:72105600-72117200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr6:72106000-72119600 Weak transcription Lung lung
12 chr6:72106000-72124800 Weak transcription Fetal Muscle Leg muscle
13 chr6:72106200-72113800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr6:72106400-72126800 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr6:72106400-72128600 Weak transcription Fetal Brain Male brain
16 chr6:72106600-72113200 Weak transcription Brain Anterior Caudate brain
17 chr6:72106600-72117200 Weak transcription Gastric stomach
18 chr6:72106600-72122000 Weak transcription Brain Substantia Nigra brain
19 chr6:72106800-72111200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr6:72106800-72113000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
21 chr6:72106800-72113000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr6:72106800-72113200 Weak transcription Right Ventricle heart
23 chr6:72106800-72113600 Weak transcription Aorta Aorta
24 chr6:72106800-72117000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr6:72106800-72119400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr6:72106800-72122000 Weak transcription Brain Cingulate Gyrus brain
27 chr6:72106800-72128600 Weak transcription Fetal Brain Female brain
28 chr6:72106800-72128800 Weak transcription Brain Germinal Matrix brain
29 chr6:72107000-72113200 Weak transcription Psoas Muscle Psoas
30 chr6:72107200-72113800 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr6:72107600-72113200 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr6:72107800-72111400 Weak transcription Left Ventricle heart
33 chr6:72107800-72112000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr6:72107800-72112000 Weak transcription HSMMtube muscle
35 chr6:72107800-72113000 Weak transcription Liver Liver
36 chr6:72107800-72113000 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr6:72107800-72113200 Weak transcription Stomach Smooth Muscle stomach
38 chr6:72107800-72114400 Weak transcription Placenta Placenta
39 chr6:72107800-72118400 Weak transcription Brain Hippocampus Middle brain
40 chr6:72107800-72125000 Weak transcription Fetal Muscle Trunk muscle
41 chr6:72108400-72111400 Weak transcription HMEC breast
42 chr6:72108800-72112800 Enhancers Muscle Satellite Cultured Cells --
43 chr6:72108800-72113000 Enhancers Osteobl bone
44 chr6:72109000-72112600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr6:72109200-72111200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr6:72109600-72110600 Enhancers Breast Myoepithelial Primary Cells Breast
47 chr6:72109600-72110600 Enhancers Cortex derived primary cultured neurospheres brain
48 chr6:72109600-72110600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
49 chr6:72109600-72110800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
50 chr6:72109600-72110800 Genic enhancers NHDF-Ad bronchial

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Last update: Aug 31, 2015