Variant report

Variant	rs540888
Chromosome Location	chr6:72249517-72249518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1471854	0.85[AFR][1000 genomes]
rs1486595	1.00[YRI][hapmap]
rs1486598	0.85[AFR][1000 genomes]
rs1486599	0.85[AFR][1000 genomes]
rs1486600	0.85[AFR][1000 genomes]
rs1486601	0.85[AFR][1000 genomes]
rs1486602	0.85[AFR][1000 genomes]
rs1486603	0.85[AFR][1000 genomes]
rs1486604	0.85[AFR][1000 genomes]
rs199643	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2050261	0.85[AFR][1000 genomes]
rs2210630	0.85[AFR][1000 genomes]
rs34177135	1.00[AMR][1000 genomes]
rs4454101	1.00[YRI][hapmap]
rs4529262	0.85[AFR][1000 genomes]
rs6453551	1.00[YRI][hapmap]
rs6453552	0.85[AFR][1000 genomes]
rs6453553	1.00[YRI][hapmap]
rs6924396	0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs6927854	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72248200-72250800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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