Variant report
Variant | rs199643 |
---|---|
Chromosome Location | chr6:72261947-72261948 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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Variant related genes | Relation type |
---|---|
ENSG00000219575 | TF binding region |
rs_ID | r2[population] |
---|---|
rs1471854 | 1.00[AFR][1000 genomes] |
rs1486595 | 1.00[YRI][hapmap] |
rs1486598 | 1.00[AFR][1000 genomes] |
rs1486599 | 1.00[AFR][1000 genomes] |
rs1486600 | 1.00[AFR][1000 genomes] |
rs1486601 | 1.00[AFR][1000 genomes] |
rs1486602 | 1.00[AFR][1000 genomes] |
rs1486603 | 1.00[AFR][1000 genomes] |
rs1486604 | 1.00[AFR][1000 genomes] |
rs2050261 | 1.00[AFR][1000 genomes] |
rs2129324 | 0.85[AFR][1000 genomes] |
rs2210630 | 1.00[AFR][1000 genomes] |
rs4454101 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
rs4529262 | 1.00[AFR][1000 genomes] |
rs512790 | 0.85[AFR][1000 genomes] |
rs540888 | 0.85[AFR][1000 genomes] |
rs6453551 | 1.00[YRI][hapmap] |
rs6453552 | 1.00[AFR][1000 genomes] |
rs6453553 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs6924396 | 0.83[YRI][hapmap];1.00[AFR][1000 genomes] |
rs6927854 | 1.00[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv830684 | chr6:72094842-72282684 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 488 gene(s) | inside rSNPs | diseases |
2 | nsv830685 | chr6:72244007-72410757 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | esv3438952 | chr6:72257531-72262329 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:72261600-72262000 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |