Variant report

Variant	rs6453552
Chromosome Location	chr6:72290396-72290397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1471854	1.00[AFR][1000 genomes]
rs1486598	1.00[AFR][1000 genomes]
rs1486599	1.00[AFR][1000 genomes]
rs1486600	1.00[AFR][1000 genomes]
rs1486601	1.00[AFR][1000 genomes]
rs1486602	1.00[AFR][1000 genomes]
rs1486603	1.00[AFR][1000 genomes]
rs1486604	1.00[AFR][1000 genomes]
rs199643	1.00[AFR][1000 genomes]
rs2050261	1.00[AFR][1000 genomes]
rs2129324	0.85[AFR][1000 genomes]
rs2210630	1.00[AFR][1000 genomes]
rs4454101	0.92[AFR][1000 genomes]
rs4529262	1.00[AFR][1000 genomes]
rs512790	0.85[AFR][1000 genomes]
rs540888	0.85[AFR][1000 genomes]
rs6453553	0.85[AFR][1000 genomes]
rs6924396	1.00[AFR][1000 genomes]
rs6927854	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3442082	chr6:72287826-72291575	Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
3	esv3359534	chr6:72287829-72291581	Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72289400-72295400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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