Variant report

Variant	rs34182424
Chromosome Location	chr3:160083918-160083919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6768295	0.91[AFR][1000 genomes]
rs6781020	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6791567	1.00[GIH][hapmap]
rs6792810	1.00[AFR][1000 genomes]
rs73875245	0.93[EUR][1000 genomes]
rs7631140	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7643188	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	esv1800136	chr3:159950498-160278160	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	esv1801767	chr3:159950498-160279411	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	esv1801474	chr3:160012843-160153305	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	206 gene(s)	inside rSNPs	diseases
7	nsv1008519	chr3:160038710-160292589	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	255 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160049400-160090600	Weak transcription	NH-A	brain
2	chr3:160054400-160091600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:160055200-160103400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:160055800-160087800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:160056200-160091000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:160056400-160098000	Weak transcription	Aorta	Aorta
7	chr3:160056600-160091600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:160058400-160088800	Weak transcription	Osteobl	bone
9	chr3:160061400-160109600	Weak transcription	Fetal Heart	heart
10	chr3:160063400-160094000	Weak transcription	Fetal Brain Female	brain
11	chr3:160065000-160091600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:160066200-160086000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr3:160066400-160099200	Weak transcription	NHEK	skin
14	chr3:160067800-160097800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:160068600-160086000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:160068600-160096000	Weak transcription	Gastric	stomach
17	chr3:160068800-160094000	Weak transcription	Adipose Nuclei	Adipose
18	chr3:160068800-160094000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:160069000-160115200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:160069800-160087600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:160070200-160086200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:160070400-160092400	Weak transcription	HMEC	breast
23	chr3:160070600-160085800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:160071000-160091000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:160071400-160098200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:160071400-160102000	Weak transcription	Small Intestine	intestine
27	chr3:160071600-160099400	Weak transcription	Placenta	Placenta
28	chr3:160071800-160091800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:160071800-160092000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr3:160072000-160096400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:160072600-160086000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr3:160072600-160096200	Weak transcription	HepG2	liver
33	chr3:160072800-160087400	Weak transcription	Brain Substantia Nigra	brain
34	chr3:160072800-160091200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:160073000-160091600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr3:160073000-160092600	Weak transcription	Fetal Kidney	kidney
37	chr3:160073200-160091600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:160073200-160097200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr3:160073400-160088800	Weak transcription	Fetal Stomach	stomach
40	chr3:160073400-160090800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr3:160073400-160099200	Weak transcription	HSMMtube	muscle
42	chr3:160073800-160086000	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr3:160073800-160086200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr3:160073800-160090000	Weak transcription	A549	lung
45	chr3:160073800-160090600	Weak transcription	Fetal Intestine Large	intestine
46	chr3:160073800-160091000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:160073800-160091200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr3:160073800-160092400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr3:160073800-160092800	Weak transcription	Brain Anterior Caudate	brain
50	chr3:160073800-160108400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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