Variant report

Variant	rs6791567
Chromosome Location	chr3:159985007-159985008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159982826..159985519-chr3:159987047..159988972,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11706810	0.84[YRI][hapmap]
rs16831149	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs17826221	0.80[YRI][hapmap]
rs34182424	1.00[GIH][hapmap]
rs6767102	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875248	0.97[EUR][1000 genomes]
rs7620828	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	esv1800136	chr3:159950498-160278160	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	esv1801767	chr3:159950498-160279411	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159971400-160035800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:159971800-159986200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:159971800-160009600	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:159972600-160009400	Weak transcription	Fetal Stomach	stomach
5	chr3:159972800-159999000	Weak transcription	Aorta	Aorta
6	chr3:159973400-159994600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:159974200-159992000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:159974200-160038000	Weak transcription	Fetal Brain Male	brain
9	chr3:159974600-159991600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:159974600-159992200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:159974600-159999600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr3:159974800-160014400	Weak transcription	HSMM	muscle
13	chr3:159975000-159991600	Weak transcription	Dnd41	blood
14	chr3:159975000-160025600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:159975000-160028000	Weak transcription	Brain Anterior Caudate	brain
16	chr3:159975000-160034200	Weak transcription	Fetal Intestine Large	intestine
17	chr3:159975200-159994400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:159975200-160036000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:159975400-159993800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr3:159975600-160009600	Weak transcription	Fetal Intestine Small	intestine
21	chr3:159975600-160046600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:159976200-160039000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:159976600-159986000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:159976600-159994400	Weak transcription	Primary B cells from cord blood	blood
25	chr3:159976600-159995800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:159977400-159985200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:159977600-159996000	Weak transcription	Left Ventricle	heart
28	chr3:159977800-159990600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:159977800-160014400	Weak transcription	NHDF-Ad	bronchial
30	chr3:159977800-160073000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:159978200-159994400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr3:159978600-159994200	Weak transcription	Osteobl	bone
33	chr3:159978800-159994400	Weak transcription	Brain Hippocampus Middle	brain
34	chr3:159978800-159999000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:159978800-159999200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr3:159979000-159987400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:159979000-159991600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:159979000-160007800	Weak transcription	Liver	Liver
39	chr3:159979200-159999000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:159979600-160003400	Weak transcription	Hela-S3	cervix
41	chr3:159981200-159996000	Weak transcription	Fetal Lung	lung
42	chr3:159981200-160038200	Weak transcription	Esophagus	oesophagus
43	chr3:159983000-159993800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:159983000-159996800	Weak transcription	GM12878-XiMat	blood
45	chr3:159983000-160009400	Weak transcription	Pancreas	Pancrea
46	chr3:159983200-159997000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:159983200-160000800	Weak transcription	Psoas Muscle	Psoas
48	chr3:159983400-160009400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr3:159983400-160014200	Weak transcription	HSMMtube	muscle
50	chr3:159983600-159999000	Weak transcription	Lung	lung

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