Variant report

Variant	rs34186563
Chromosome Location	chr6:72019293-72019294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10498878	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13203950	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13205802	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13208791	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13212907	1.00[EUR][1000 genomes]
rs13220674	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1358381	0.80[EUR][1000 genomes]
rs16881094	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881149	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16881155	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1825	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1852580	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2146370	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs33999954	0.80[EUR][1000 genomes]
rs34137300	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34436988	0.80[EUR][1000 genomes]
rs35519429	0.80[EUR][1000 genomes]
rs68166313	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907173	1.00[EUR][1000 genomes]
rs6913383	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6935716	1.00[EUR][1000 genomes]
rs7741988	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
2	chr6:72001000-72021600	Weak transcription	Fetal Lung	lung
3	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
4	chr6:72001800-72020000	Weak transcription	Fetal Brain Female	brain
5	chr6:72002000-72022000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:72004200-72021800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:72004200-72030600	Weak transcription	Lung	lung
8	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:72004400-72019600	Weak transcription	NH-A	brain
10	chr6:72004400-72021600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:72004400-72030800	Weak transcription	Pancreas	Pancrea
12	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:72007000-72023000	Weak transcription	Liver	Liver
14	chr6:72009800-72025800	Weak transcription	Hela-S3	cervix
15	chr6:72010200-72019600	Weak transcription	A549	lung
16	chr6:72010800-72020000	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:72010800-72022400	Weak transcription	NHEK	skin
18	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
19	chr6:72011600-72020000	Weak transcription	Left Ventricle	heart
20	chr6:72011600-72021600	Weak transcription	Psoas Muscle	Psoas
21	chr6:72011600-72022600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:72011600-72033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:72011800-72022600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:72011800-72022800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:72013200-72019400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:72013200-72020200	Weak transcription	HMEC	breast
27	chr6:72013200-72022400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:72013800-72022600	Weak transcription	Adipose Nuclei	Adipose
30	chr6:72018000-72020400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:72018000-72021600	Weak transcription	Fetal Heart	heart
32	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:72018000-72043200	Weak transcription	HSMM	muscle
35	chr6:72018400-72020400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr6:72018400-72022000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:72018600-72030800	Weak transcription	Placenta	Placenta
38	chr6:72018800-72019600	Enhancers	Brain Angular Gyrus	brain
39	chr6:72018800-72019600	Enhancers	Fetal Brain Male	brain
40	chr6:72019000-72019400	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr6:72019000-72019600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:72019000-72019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:72019000-72020200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:72019000-72020200	Enhancers	HSMMtube	muscle
45	chr6:72019000-72020400	Enhancers	Brain Anterior Caudate	brain
46	chr6:72019200-72019800	Enhancers	Osteobl	bone
47	chr6:72019200-72026400	Weak transcription	Muscle Satellite Cultured Cells	--

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