Variant report

Variant	rs10498878
Chromosome Location	chr6:72043809-72043810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10485017	1.00[CEU][hapmap]
rs13203950	0.80[EUR][1000 genomes]
rs13205802	0.80[EUR][1000 genomes]
rs13208791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13212120	0.92[AFR][1000 genomes]
rs13212398	0.92[AFR][1000 genomes]
rs13212907	0.80[EUR][1000 genomes]
rs13220674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1322762	0.96[EUR][1000 genomes]
rs1358379	1.00[CEU][hapmap]
rs1358381	1.00[EUR][1000 genomes]
rs1527710	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs1527711	1.00[CEU][hapmap]
rs16881094	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16881125	0.87[AFR][1000 genomes]
rs16881130	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[AFR][1000 genomes]
rs16881149	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881155	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881181	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1825	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1852580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2146370	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs33997649	0.89[AFR][1000 genomes]
rs33999954	1.00[EUR][1000 genomes]
rs34137300	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34186563	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34436988	1.00[EUR][1000 genomes]
rs34800792	0.92[AFR][1000 genomes]
rs35519429	1.00[EUR][1000 genomes]
rs68166313	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6907173	0.80[EUR][1000 genomes]
rs6913383	0.80[EUR][1000 genomes]
rs6935716	0.80[EUR][1000 genomes]
rs71555480	0.97[AFR][1000 genomes]
rs7739908	0.82[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.82[AFR][1000 genomes]
rs7741988	0.80[EUR][1000 genomes]
rs7765945	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs9455445	0.89[EUR][1000 genomes]
rs9455448	1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs9455449	1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs9455450	0.84[EUR][1000 genomes]
rs980027	1.00[CEU][hapmap];1.00[MEX][hapmap]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
2	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
4	chr6:72033800-72046000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
6	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:72034400-72052000	Weak transcription	Adipose Nuclei	Adipose
8	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
9	chr6:72036600-72055800	Weak transcription	Fetal Lung	lung
10	chr6:72039200-72047800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:72039400-72044600	Weak transcription	Fetal Kidney	kidney
12	chr6:72039400-72060600	Weak transcription	Aorta	Aorta
13	chr6:72040600-72056600	Weak transcription	Lung	lung
14	chr6:72041600-72044800	Enhancers	NHLF	lung
15	chr6:72042400-72045600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:72042400-72045600	Enhancers	NHDF-Ad	bronchial
17	chr6:72042600-72044800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:72042800-72045600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:72043000-72044200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:72043000-72044200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:72043000-72044800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:72043000-72045000	Enhancers	Osteobl	bone
23	chr6:72043200-72044000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:72043200-72044200	Enhancers	NH-A	brain
25	chr6:72043200-72044600	Enhancers	HSMM	muscle
26	chr6:72043200-72044800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:72043200-72045600	Enhancers	HMEC	breast
28	chr6:72043200-72045800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:72043400-72044000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:72043400-72044800	Enhancers	A549	lung
31	chr6:72043400-72045200	Enhancers	Hela-S3	cervix
32	chr6:72043400-72060200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:72043600-72044000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:72043600-72044000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:72043600-72044000	Enhancers	HSMMtube	muscle
36	chr6:72043600-72044800	Enhancers	HUVEC	blood vessel
37	chr6:72043600-72044800	Enhancers	NHEK	skin
38	chr6:72043800-72044400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:72043800-72045600	Enhancers	H1 Cell Line	embryonic stem cell

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