Variant report

Variant	rs1527710
Chromosome Location	chr6:72115581-72115582
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr6:72113042-72115941	HEK293	kidney:	n/a	n/a
2	POLR2A	chr6:72115303-72116149	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr6:72115520-72116239	PANC-1	pancreas:	n/a	n/a

Variant related genes	Relation type
MIR30A	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10214508	0.92[EUR][1000 genomes]
rs10485017	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13197578	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13202330	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13203324	0.85[EUR][1000 genomes]
rs1358379	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405847	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1405849	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527708	0.89[EUR][1000 genomes]
rs1527709	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527711	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527713	0.92[EUR][1000 genomes]
rs16881130	1.00[MEX][hapmap]
rs16881149	1.00[CEU][hapmap]
rs16881181	1.00[CEU][hapmap]
rs16881235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881296	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1852579	0.92[EUR][1000 genomes]
rs1881033	0.89[EUR][1000 genomes]
rs2146370	1.00[CEU][hapmap]
rs35217364	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35663023	0.85[EUR][1000 genomes]
rs35995963	0.96[EUR][1000 genomes]
rs6918170	0.92[EUR][1000 genomes]
rs71555485	0.85[EUR][1000 genomes]
rs765466	0.87[ASW][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7739908	1.00[MEX][hapmap]
rs7765945	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9455448	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9455449	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9455454	0.92[EUR][1000 genomes]
rs980027	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
2	chr6:72104000-72122000	Weak transcription	Fetal Stomach	stomach
3	chr6:72105600-72117200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:72106000-72119600	Weak transcription	Lung	lung
5	chr6:72106000-72124800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:72106400-72126800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:72106400-72128600	Weak transcription	Fetal Brain Male	brain
8	chr6:72106600-72117200	Weak transcription	Gastric	stomach
9	chr6:72106600-72122000	Weak transcription	Brain Substantia Nigra	brain
10	chr6:72106800-72117000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:72106800-72119400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:72106800-72122000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:72106800-72128600	Weak transcription	Fetal Brain Female	brain
14	chr6:72106800-72128800	Weak transcription	Brain Germinal Matrix	brain
15	chr6:72107800-72118400	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:72107800-72125000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:72111800-72116000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:72112000-72115800	Enhancers	NHDF-Ad	bronchial
19	chr6:72112000-72117200	Weak transcription	Left Ventricle	heart
20	chr6:72112000-72117600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:72112800-72116000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:72112800-72116200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:72112800-72118200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:72113000-72115600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:72113000-72115600	Enhancers	Liver	Liver
26	chr6:72113000-72117400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:72113200-72115800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr6:72113200-72115800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr6:72113200-72116200	Enhancers	Psoas Muscle	Psoas
30	chr6:72113400-72115600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:72113400-72115600	Enhancers	Placenta Amnion	Placenta Amnion
32	chr6:72113400-72116200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:72113400-72117200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr6:72113800-72116200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr6:72114000-72119400	Weak transcription	Right Ventricle	heart
36	chr6:72114000-72124800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:72114200-72115600	Enhancers	NHLF	lung
38	chr6:72114200-72115800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr6:72114200-72117000	Enhancers	Fetal Kidney	kidney
40	chr6:72114200-72120600	Weak transcription	Aorta	Aorta
41	chr6:72114200-72122200	Weak transcription	Right Atrium	heart
42	chr6:72114200-72125000	Weak transcription	Brain Angular Gyrus	brain
43	chr6:72114400-72116000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr6:72114400-72117000	Enhancers	HUVEC	blood vessel
45	chr6:72114400-72118200	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr6:72114600-72115600	Enhancers	H9 Cell Line	embryonic stem cell
47	chr6:72114600-72115600	Enhancers	Muscle Satellite Cultured Cells	--
48	chr6:72114600-72116400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:72114600-72117000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:72114600-72118600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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