Variant report

Variant	rs13197578
Chromosome Location	chr6:72102890-72102891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72102188..72105063-chr6:72213344..72216016,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10214508	0.92[EUR][1000 genomes]
rs10485017	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13202330	1.00[EUR][1000 genomes]
rs13203324	0.85[EUR][1000 genomes]
rs1358379	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405849	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527708	0.89[EUR][1000 genomes]
rs1527709	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527710	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527711	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527713	0.92[EUR][1000 genomes]
rs16881149	1.00[CEU][hapmap]
rs16881181	1.00[CEU][hapmap]
rs16881235	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881296	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1852579	0.92[EUR][1000 genomes]
rs1881033	0.89[EUR][1000 genomes]
rs2146370	1.00[CEU][hapmap]
rs35217364	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35663023	0.85[EUR][1000 genomes]
rs35995963	0.96[EUR][1000 genomes]
rs6918170	0.92[EUR][1000 genomes]
rs71555485	0.85[EUR][1000 genomes]
rs7765945	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9455448	1.00[CEU][hapmap]
rs9455449	1.00[CEU][hapmap]
rs9455454	0.92[EUR][1000 genomes]
rs980027	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
2	chr6:72084200-72106600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:72085800-72105400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:72093400-72106400	Weak transcription	Spleen	Spleen
5	chr6:72094000-72105200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:72095000-72103600	Weak transcription	Stomach Mucosa	stomach
7	chr6:72095400-72103600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:72096800-72106000	Enhancers	Adipose Nuclei	Adipose
9	chr6:72097600-72103400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:72098200-72104800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:72098400-72103200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:72098400-72105400	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
14	chr6:72098600-72103000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:72098600-72103600	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:72098800-72103800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:72099000-72103000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:72099200-72106200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:72099400-72103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:72099400-72103200	Weak transcription	NHEK	skin
21	chr6:72099400-72103400	Weak transcription	Brain Substantia Nigra	brain
22	chr6:72099600-72114400	Weak transcription	Fetal Intestine Large	intestine
23	chr6:72099800-72104800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:72100200-72103200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:72100200-72106400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:72100200-72113200	Weak transcription	Fetal Intestine Small	intestine
27	chr6:72101000-72106400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:72101000-72113200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:72101400-72103600	Enhancers	NHLF	lung
30	chr6:72101400-72104800	Weak transcription	Brain Angular Gyrus	brain
31	chr6:72101400-72106400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:72101600-72103400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:72101600-72104800	Genic enhancers	Hela-S3	cervix
34	chr6:72101600-72111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:72101800-72103000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:72101800-72103000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:72101800-72103200	Weak transcription	Fetal Kidney	kidney
38	chr6:72101800-72103600	Weak transcription	Brain Anterior Caudate	brain
39	chr6:72101800-72104000	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr6:72101800-72105000	Enhancers	Placenta Amnion	Placenta Amnion
41	chr6:72101800-72105400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr6:72101800-72105800	Weak transcription	Gastric	stomach
43	chr6:72101800-72105800	Weak transcription	Lung	lung
44	chr6:72101800-72106400	Enhancers	NHDF-Ad	bronchial
45	chr6:72101800-72106600	Enhancers	Osteobl	bone
46	chr6:72102000-72103200	Weak transcription	Psoas Muscle	Psoas
47	chr6:72102000-72104000	Genic enhancers	HSMM	muscle
48	chr6:72102000-72104800	Weak transcription	Left Ventricle	heart
49	chr6:72102000-72105400	Enhancers	HMEC	breast
50	chr6:72102400-72103000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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