Variant report

Variant	rs13203324
Chromosome Location	chr6:72092449-72092450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10485017	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs13197578	0.85[EUR][1000 genomes]
rs13202330	0.85[EUR][1000 genomes]
rs1358379	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1405849	0.85[EUR][1000 genomes]
rs1527709	0.85[EUR][1000 genomes]
rs1527710	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1527711	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1527713	0.93[EUR][1000 genomes]
rs16881149	1.00[CEU][hapmap]
rs16881181	1.00[CEU][hapmap]
rs16881235	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16881296	0.85[EUR][1000 genomes]
rs1852579	0.93[EUR][1000 genomes]
rs2146370	1.00[CEU][hapmap]
rs35217364	0.85[EUR][1000 genomes]
rs35995963	0.89[EUR][1000 genomes]
rs6918170	0.93[EUR][1000 genomes]
rs7765945	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9455448	1.00[CEU][hapmap]
rs9455449	1.00[CEU][hapmap]
rs9455454	0.93[EUR][1000 genomes]
rs980027	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329016	chr6:72090531-72092979	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3356917	chr6:72090881-72093079	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72061600-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:72076000-72093400	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
4	chr6:72077600-72093400	Weak transcription	Brain Anterior Caudate	brain
5	chr6:72077600-72094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:72077800-72093000	Weak transcription	Lung	lung
7	chr6:72077800-72093200	Weak transcription	Pancreas	Pancrea
8	chr6:72077800-72097000	Weak transcription	Psoas Muscle	Psoas
9	chr6:72077800-72097200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:72078200-72095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:72079800-72098800	Weak transcription	Brain Substantia Nigra	brain
12	chr6:72082600-72093200	Weak transcription	Osteobl	bone
13	chr6:72083400-72094600	Weak transcription	Fetal Intestine Large	intestine
14	chr6:72083800-72097800	Weak transcription	Placenta	Placenta
15	chr6:72084200-72097000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:72084200-72106600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:72084400-72092600	Weak transcription	Fetal Lung	lung
18	chr6:72084400-72093400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:72084400-72094800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:72084400-72094800	Weak transcription	Fetal Intestine Small	intestine
21	chr6:72084400-72099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:72085600-72096800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:72085800-72105400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:72086200-72093000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:72087000-72093200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:72087400-72098200	Weak transcription	Colonic Mucosa	Colon
27	chr6:72088000-72093400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:72088400-72097800	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:72088600-72093000	Weak transcription	Left Ventricle	heart
30	chr6:72088600-72093600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:72088600-72097000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:72088800-72093200	Weak transcription	Right Ventricle	heart
33	chr6:72088800-72095000	Weak transcription	HSMMtube	muscle
34	chr6:72088800-72101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:72089000-72092600	Weak transcription	HUVEC	blood vessel
36	chr6:72089000-72093800	Weak transcription	Liver	Liver
37	chr6:72090400-72101000	Weak transcription	Gastric	stomach
38	chr6:72091000-72092600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:72091000-72092600	Weak transcription	HMEC	breast
40	chr6:72091000-72092600	Weak transcription	HSMM	muscle
41	chr6:72091000-72094600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:72091000-72095200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:72091200-72092600	Weak transcription	Fetal Kidney	kidney
44	chr6:72091200-72092600	Weak transcription	A549	lung
45	chr6:72091200-72093000	Weak transcription	NHDF-Ad	bronchial
46	chr6:72091200-72093400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:72091200-72093800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:72091200-72093800	Weak transcription	NHLF	lung
49	chr6:72091200-72094000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:72091200-72094600	Weak transcription	Adipose Nuclei	Adipose

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