Variant report

Variant	rs1405849
Chromosome Location	chr6:72109101-72109102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10214508	0.92[EUR][1000 genomes]
rs10485017	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13197578	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13202330	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13203324	0.85[EUR][1000 genomes]
rs1358379	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405847	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1527708	0.89[EUR][1000 genomes]
rs1527709	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527710	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527711	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527713	0.92[EUR][1000 genomes]
rs16881149	1.00[CEU][hapmap]
rs16881181	1.00[CEU][hapmap]
rs16881235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881296	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1852579	0.92[EUR][1000 genomes]
rs1881033	0.89[EUR][1000 genomes]
rs2146370	1.00[CEU][hapmap]
rs35217364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35663023	0.85[EUR][1000 genomes]
rs35995963	0.96[EUR][1000 genomes]
rs6918170	0.92[EUR][1000 genomes]
rs71555485	0.85[EUR][1000 genomes]
rs765466	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7765945	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9455448	1.00[CEU][hapmap]
rs9455449	1.00[CEU][hapmap]
rs9455454	0.92[EUR][1000 genomes]
rs980027	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
2	chr6:72099600-72114400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:72100200-72113200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:72101000-72113200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:72101600-72111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:72103400-72114400	Weak transcription	Small Intestine	intestine
7	chr6:72104000-72122000	Weak transcription	Fetal Stomach	stomach
8	chr6:72104200-72111800	Weak transcription	Fetal Heart	heart
9	chr6:72105000-72110400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:72105000-72113000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:72105600-72117200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:72106000-72109200	Weak transcription	NHLF	lung
13	chr6:72106000-72119600	Weak transcription	Lung	lung
14	chr6:72106000-72124800	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:72106200-72109400	Genic enhancers	Fetal Kidney	kidney
16	chr6:72106200-72113800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:72106400-72126800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:72106400-72128600	Weak transcription	Fetal Brain Male	brain
19	chr6:72106600-72110400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:72106600-72113200	Weak transcription	Brain Anterior Caudate	brain
21	chr6:72106600-72117200	Weak transcription	Gastric	stomach
22	chr6:72106600-72122000	Weak transcription	Brain Substantia Nigra	brain
23	chr6:72106800-72109200	Weak transcription	NHDF-Ad	bronchial
24	chr6:72106800-72109600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:72106800-72110200	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:72106800-72110200	Genic enhancers	Hela-S3	cervix
27	chr6:72106800-72110400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:72106800-72111200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:72106800-72113000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:72106800-72113000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:72106800-72113200	Weak transcription	Right Ventricle	heart
32	chr6:72106800-72113600	Weak transcription	Aorta	Aorta
33	chr6:72106800-72117000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:72106800-72119400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:72106800-72122000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr6:72106800-72128600	Weak transcription	Fetal Brain Female	brain
37	chr6:72106800-72128800	Weak transcription	Brain Germinal Matrix	brain
38	chr6:72107000-72109200	Strong transcription	HSMM	muscle
39	chr6:72107000-72113200	Weak transcription	Psoas Muscle	Psoas
40	chr6:72107200-72109600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:72107200-72113800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr6:72107600-72109600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:72107600-72110400	Weak transcription	Adipose Nuclei	Adipose
44	chr6:72107600-72110400	Weak transcription	Brain Angular Gyrus	brain
45	chr6:72107600-72113200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:72107800-72109200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:72107800-72109200	Enhancers	A549	lung
48	chr6:72107800-72109600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:72107800-72109600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:72107800-72110400	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links