Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72200765..72203412-chr6:72209014..72210877,2	MCF-7	breast:
2	chr6:72199284..72202242-chr6:72207805..72209852,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10214508	0.93[EUR][1000 genomes]
rs10485017	0.85[EUR][1000 genomes]
rs13197578	0.85[EUR][1000 genomes]
rs13202330	0.85[EUR][1000 genomes]
rs1333926	0.92[ASN][1000 genomes]
rs1358379	0.85[EUR][1000 genomes]
rs1405849	0.85[EUR][1000 genomes]
rs1527708	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1527709	0.85[EUR][1000 genomes]
rs1527710	0.85[EUR][1000 genomes]
rs1527711	0.85[EUR][1000 genomes]
rs16881235	0.85[EUR][1000 genomes]
rs16881296	0.85[EUR][1000 genomes]
rs1881033	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931212	0.97[ASN][1000 genomes]
rs2273064	0.83[ASN][1000 genomes]
rs35217364	0.85[EUR][1000 genomes]
rs35995963	0.82[EUR][1000 genomes]
rs71555485	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765945	0.85[EUR][1000 genomes]
rs980027	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv1025409	chr6:72175998-72205044	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72192000-72209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:72198200-72202400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:72198400-72205200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:72199600-72205600	Weak transcription	Aorta	Aorta
5	chr6:72199800-72205000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:72200000-72205000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:72200000-72205200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:72200200-72205200	Weak transcription	Osteobl	bone
9	chr6:72200200-72205400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:72200400-72205200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:72200400-72205200	Weak transcription	HUVEC	blood vessel
12	chr6:72200600-72205000	Weak transcription	NHLF	lung
13	chr6:72200800-72205600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:72201000-72205200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:72201000-72205200	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:72201000-72206400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:72201400-72205200	Weak transcription	HSMMtube	muscle
18	chr6:72201600-72205200	Weak transcription	HSMM	muscle

Quick Search: