Variant report

Variant	rs2273064
Chromosome Location	chr6:72127053-72127054
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:12)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-3	chr6:72127023-72127095	ENSG00000233237
2	lnc-B3GAT2-3	chr6:72127023-72127095	ENSG00000233237
3	lnc-B3GAT2-3	chr6:72127023-72127146	ENSG00000233237
4	lnc-B3GAT2-3	chr6:72127023-72127146	ENSG00000233237
5	lnc-B3GAT2-3	chr6:72127023-72127146	ENSG00000233237
6	lnc-B3GAT2-3	chr6:72127023-72127146	XLOC_005764
7	lnc-B3GAT2-3	chr6:72127023-72127095	XLOC_005764
8	lnc-B3GAT2-3	chr6:72127023-72127139	ENSG00000269966.1
9	lnc-B3GAT2-3	chr6:72127023-72127193	NONHSAT113497
10	lnc-B3GAT2-3	chr6:72127023-72127146	ENSG00000233237.2
11	lnc-B3GAT2-3	chr6:72127023-72127161	NONHSAT113509
12	lnc-B3GAT2-3	chr6:72127023-72127095	ENSG00000233237.2

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1527708	0.80[ASN][1000 genomes]
rs1881033	0.83[ASN][1000 genomes]
rs1931212	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35663023	0.83[ASN][1000 genomes]
rs71555485	0.83[ASN][1000 genomes]
rs73747174	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72106400-72128600	Weak transcription	Fetal Brain Male	brain
2	chr6:72106800-72128600	Weak transcription	Fetal Brain Female	brain
3	chr6:72106800-72128800	Weak transcription	Brain Germinal Matrix	brain
4	chr6:72116200-72128600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:72117600-72128000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:72118200-72127800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:72120000-72129000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:72122400-72127400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:72122400-72128800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:72122600-72127400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:72122600-72128200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:72122600-72128800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:72122600-72129000	Weak transcription	Gastric	stomach
14	chr6:72123400-72128600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:72123600-72127200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:72124200-72127200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:72124200-72127200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:72124400-72127200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:72124400-72127200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:72124400-72127200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:72124400-72127200	Strong transcription	Placenta	Placenta
22	chr6:72124600-72127200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:72124600-72127200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:72124600-72127200	Strong transcription	Fetal Lung	lung
25	chr6:72124600-72127400	Genic enhancers	HMEC	breast
26	chr6:72124800-72127200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:72124800-72127200	Strong transcription	Adipose Nuclei	Adipose
28	chr6:72124800-72127400	Genic enhancers	Brain Anterior Caudate	brain
29	chr6:72124800-72127400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:72125000-72127800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr6:72125200-72127200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:72125200-72127200	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:72125200-72127200	Strong transcription	NH-A	brain
34	chr6:72125200-72127600	Strong transcription	HSMM	muscle
35	chr6:72125200-72128800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:72125400-72127200	Strong transcription	HUVEC	blood vessel
37	chr6:72125400-72127400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:72125800-72127200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:72126000-72127200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:72126000-72127200	Strong transcription	Fetal Stomach	stomach
41	chr6:72126000-72127600	Weak transcription	Colon Smooth Muscle	Colon
42	chr6:72126200-72127400	Enhancers	Psoas Muscle	Psoas
43	chr6:72126200-72127400	Strong transcription	Osteobl	bone
44	chr6:72126200-72127600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:72126400-72127400	Weak transcription	NHLF	lung
46	chr6:72126400-72127600	Enhancers	Brain Angular Gyrus	brain
47	chr6:72126400-72127600	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:72126400-72128000	Transcr. at gene 5' and 3'	A549	lung
49	chr6:72126400-72129000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:72126600-72127200	Strong transcription	Fetal Intestine Small	intestine

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