Variant report

Variant	rs71555485
Chromosome Location	chr6:72195470-72195471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72194308..72195999-chr6:72198421..72200514,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10214508	0.93[EUR][1000 genomes]
rs10485017	0.85[EUR][1000 genomes]
rs13197578	0.85[EUR][1000 genomes]
rs13202330	0.85[EUR][1000 genomes]
rs1333926	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1358379	0.85[EUR][1000 genomes]
rs1405849	0.85[EUR][1000 genomes]
rs1527708	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1527709	0.85[EUR][1000 genomes]
rs1527710	0.85[EUR][1000 genomes]
rs1527711	0.85[EUR][1000 genomes]
rs16881235	0.85[EUR][1000 genomes]
rs16881296	0.85[EUR][1000 genomes]
rs1881033	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931212	0.97[ASN][1000 genomes]
rs2273064	0.83[ASN][1000 genomes]
rs35217364	0.85[EUR][1000 genomes]
rs35663023	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35995963	0.82[EUR][1000 genomes]
rs7765945	0.85[EUR][1000 genomes]
rs980027	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv1025409	chr6:72175998-72205044	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72189200-72199200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:72189400-72195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:72189600-72199800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:72189800-72196000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:72190400-72199000	Weak transcription	Hela-S3	cervix
6	chr6:72191400-72200400	Weak transcription	Psoas Muscle	Psoas
7	chr6:72191800-72196000	Weak transcription	NHEK	skin
8	chr6:72192000-72196000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:72192000-72196000	Weak transcription	NH-A	brain
10	chr6:72192000-72196000	Weak transcription	Osteobl	bone
11	chr6:72192000-72200600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:72192000-72209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:72192400-72195800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:72192400-72196000	Weak transcription	NHLF	lung
15	chr6:72192400-72199400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:72192600-72195600	Weak transcription	HSMM	muscle
17	chr6:72192600-72195800	Weak transcription	HSMMtube	muscle
18	chr6:72192600-72196000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:72192600-72196000	Weak transcription	NHDF-Ad	bronchial
20	chr6:72193800-72197600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:72193800-72197800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:72194800-72199000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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