Variant report
| Variant | rs10214508 |
|---|---|
| Chromosome Location | chr6:72146386-72146387 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10485017 | 0.92[EUR][1000 genomes] |
| rs13197578 | 0.92[EUR][1000 genomes] |
| rs13202330 | 0.92[EUR][1000 genomes] |
| rs1358379 | 0.92[EUR][1000 genomes] |
| rs1405849 | 0.92[EUR][1000 genomes] |
| rs1527708 | 0.96[EUR][1000 genomes] |
| rs1527709 | 0.92[EUR][1000 genomes] |
| rs1527710 | 1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs1527711 | 0.92[EUR][1000 genomes] |
| rs1527713 | 0.85[EUR][1000 genomes] |
| rs16881235 | 0.92[EUR][1000 genomes] |
| rs16881296 | 0.92[EUR][1000 genomes] |
| rs1852579 | 0.85[EUR][1000 genomes] |
| rs1881033 | 0.96[EUR][1000 genomes] |
| rs35217364 | 0.92[EUR][1000 genomes] |
| rs35663023 | 0.93[EUR][1000 genomes] |
| rs35995963 | 0.89[EUR][1000 genomes] |
| rs6918170 | 0.85[EUR][1000 genomes] |
| rs71555485 | 0.93[EUR][1000 genomes] |
| rs7765945 | 1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs9455448 | 1.00[TSI][hapmap] |
| rs9455449 | 1.00[TSI][hapmap] |
| rs9455454 | 0.85[EUR][1000 genomes] |
| rs980027 | 1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830684 | chr6:72094842-72282684 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 488 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:72146200-72146600 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
