Variant report

Variant	rs35995963
Chromosome Location	chr6:72100754-72100755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10214508	0.89[EUR][1000 genomes]
rs10485017	0.96[EUR][1000 genomes]
rs13197578	0.96[EUR][1000 genomes]
rs13202330	0.96[EUR][1000 genomes]
rs13203324	0.89[EUR][1000 genomes]
rs1358379	0.96[EUR][1000 genomes]
rs1405849	0.96[EUR][1000 genomes]
rs1527708	0.85[EUR][1000 genomes]
rs1527709	0.96[EUR][1000 genomes]
rs1527710	0.96[EUR][1000 genomes]
rs1527711	0.96[EUR][1000 genomes]
rs1527713	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16881181	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16881235	0.96[EUR][1000 genomes]
rs16881296	0.96[EUR][1000 genomes]
rs1852579	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1881033	0.85[EUR][1000 genomes]
rs35217364	0.96[EUR][1000 genomes]
rs35663023	0.82[EUR][1000 genomes]
rs6918170	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71555485	0.82[EUR][1000 genomes]
rs7765945	0.96[EUR][1000 genomes]
rs9455448	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9455449	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9455450	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9455454	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs980027	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
2	chr6:72084200-72106600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:72085800-72105400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:72088800-72101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:72090400-72101000	Weak transcription	Gastric	stomach
6	chr6:72093400-72101200	Genic enhancers	Hela-S3	cervix
7	chr6:72093400-72106400	Weak transcription	Spleen	Spleen
8	chr6:72094000-72105200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:72095000-72103600	Weak transcription	Stomach Mucosa	stomach
10	chr6:72095400-72103600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:72096800-72106000	Enhancers	Adipose Nuclei	Adipose
12	chr6:72097000-72101800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:72097000-72102000	Enhancers	Liver	Liver
14	chr6:72097200-72102400	Genic enhancers	A549	lung
15	chr6:72097400-72102600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:72097600-72103400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:72098200-72104800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:72098400-72100800	Weak transcription	HSMMtube	muscle
19	chr6:72098400-72102600	Weak transcription	Placenta	Placenta
20	chr6:72098400-72102600	Weak transcription	Small Intestine	intestine
21	chr6:72098400-72103200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:72098400-72105400	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
24	chr6:72098600-72102800	Weak transcription	Fetal Stomach	stomach
25	chr6:72098600-72103000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:72098600-72103600	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:72098800-72101400	Weak transcription	NHLF	lung
28	chr6:72098800-72103800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:72099000-72100800	Weak transcription	Fetal Lung	lung
30	chr6:72099000-72101400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:72099000-72101800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:72099000-72102600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:72099000-72102600	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:72099000-72103000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:72099200-72100800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:72099200-72101000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:72099200-72101000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:72099200-72101000	Weak transcription	HMEC	breast
39	chr6:72099200-72101200	Weak transcription	Right Atrium	heart
40	chr6:72099200-72101400	Weak transcription	Osteobl	bone
41	chr6:72099200-72101800	Weak transcription	NHDF-Ad	bronchial
42	chr6:72099200-72102000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:72099200-72102600	Weak transcription	Fetal Heart	heart
44	chr6:72099200-72102600	Weak transcription	NH-A	brain
45	chr6:72099200-72106200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:72099400-72101200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:72099400-72103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:72099400-72103200	Weak transcription	NHEK	skin
49	chr6:72099400-72103400	Weak transcription	Brain Substantia Nigra	brain
50	chr6:72099600-72100800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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