Variant report

Variant	rs1931212
Chromosome Location	chr6:72191628-72191629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72186892..72189303-chr6:72189669..72192556,2	K562	blood:
2	chr6:72189935..72191890-chr6:72192010..72194805,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12183351	0.92[JPT][hapmap]
rs1333926	0.90[ASN][1000 genomes]
rs1527708	0.94[ASN][1000 genomes]
rs1881033	0.97[ASN][1000 genomes]
rs2087095	0.82[JPT][hapmap]
rs2273064	0.82[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35663023	0.97[ASN][1000 genomes]
rs71555485	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv1025409	chr6:72175998-72205044	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72183000-72192600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:72185400-72192600	Enhancers	HSMM	muscle
3	chr6:72186800-72193200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:72187000-72192000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:72187000-72192600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:72187000-72193000	Enhancers	Adipose Nuclei	Adipose
7	chr6:72187800-72193200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:72189200-72191800	Enhancers	NHEK	skin
9	chr6:72189200-72192400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:72189200-72192400	Enhancers	NHLF	lung
11	chr6:72189200-72192600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:72189200-72192600	Enhancers	HSMMtube	muscle
13	chr6:72189200-72192600	Enhancers	NHDF-Ad	bronchial
14	chr6:72189200-72193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:72189200-72193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:72189200-72199200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:72189400-72192000	Enhancers	HUVEC	blood vessel
18	chr6:72189400-72192600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:72189400-72195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:72189600-72199800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:72189800-72193800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:72189800-72196000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:72190200-72191800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:72190400-72192000	Enhancers	Osteobl	bone
25	chr6:72190400-72199000	Weak transcription	Hela-S3	cervix
26	chr6:72190600-72192000	Enhancers	NH-A	brain
27	chr6:72190800-72191800	Weak transcription	Right Atrium	heart
28	chr6:72190800-72192000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:72190800-72192600	Enhancers	HMEC	breast
30	chr6:72191000-72192400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:72191200-72192000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:72191400-72191800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:72191400-72200400	Weak transcription	Psoas Muscle	Psoas

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