Variant report

Variant	rs12183351
Chromosome Location	chr6:72295183-72295184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:39681040..39682816-chr6:72294884..72296402,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171345	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10223675	0.88[ASN][1000 genomes]
rs1204328	0.83[ASN][1000 genomes]
rs1575213	1.00[CEU][hapmap]
rs16881625	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs199633	0.86[JPT][hapmap]
rs199634	0.86[JPT][hapmap]
rs2087094	0.96[EUR][1000 genomes]
rs2087095	1.00[CEU][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes]
rs2101384	0.96[EUR][1000 genomes]
rs2101385	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]
rs2145545	0.83[ASN][1000 genomes]
rs2225662	0.87[EUR][1000 genomes]
rs2348544	0.83[ASN][1000 genomes]
rs56680683	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56739711	0.96[EUR][1000 genomes]
rs57143006	0.96[EUR][1000 genomes]
rs58600042	0.96[EUR][1000 genomes]
rs58603009	0.96[EUR][1000 genomes]
rs59171312	0.96[EUR][1000 genomes]
rs59288255	0.96[EUR][1000 genomes]
rs59968751	0.91[EUR][1000 genomes]
rs60059806	0.96[EUR][1000 genomes]
rs60517305	0.96[EUR][1000 genomes]
rs61710195	0.96[EUR][1000 genomes]
rs72648392	0.96[EUR][1000 genomes]
rs72648393	0.96[EUR][1000 genomes]
rs72648394	0.96[EUR][1000 genomes]
rs72648395	0.96[EUR][1000 genomes]
rs72648396	0.96[EUR][1000 genomes]
rs72648397	0.96[EUR][1000 genomes]
rs72648398	0.96[EUR][1000 genomes]
rs72648399	0.96[EUR][1000 genomes]
rs72648400	0.96[EUR][1000 genomes]
rs72648401	0.96[EUR][1000 genomes]
rs72648402	0.96[EUR][1000 genomes]
rs72651603	0.96[EUR][1000 genomes]
rs72651604	0.96[EUR][1000 genomes]
rs72651605	0.96[EUR][1000 genomes]
rs72651606	0.96[EUR][1000 genomes]
rs72651607	0.96[EUR][1000 genomes]
rs72651608	0.96[EUR][1000 genomes]
rs72651609	0.96[EUR][1000 genomes]
rs72651610	0.96[EUR][1000 genomes]
rs72651611	0.96[EUR][1000 genomes]
rs72651612	0.96[EUR][1000 genomes]
rs72651670	0.96[EUR][1000 genomes]
rs72651671	0.96[EUR][1000 genomes]
rs72651672	0.96[EUR][1000 genomes]
rs72651673	0.96[EUR][1000 genomes]
rs72651690	0.96[EUR][1000 genomes]
rs73525252	0.88[ASN][1000 genomes]
rs9293846	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9442685	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9442691	0.88[ASN][1000 genomes]
rs9442693	0.88[ASN][1000 genomes]
rs9446417	1.00[CEU][hapmap]
rs9446442	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72289400-72295400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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