Variant report

Variant	rs2145545
Chromosome Location	chr6:72415871-72415872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10223675	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1204328	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12183351	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs1575213	1.00[CEU][hapmap]
rs16881625	0.86[ASN][1000 genomes]
rs2087095	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2101385	1.00[CEU][hapmap]
rs2348544	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56680683	0.83[ASN][1000 genomes]
rs73525252	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9293846	0.86[ASN][1000 genomes]
rs9442685	0.86[ASN][1000 genomes]
rs9442691	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9442693	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9446417	1.00[CEU][hapmap]
rs9446442	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72415400-72416400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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