Variant report

Variant	rs9446417
Chromosome Location	chr6:72291479-72291480
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12183351	1.00[CEU][hapmap]
rs1575213	1.00[CEU][hapmap]
rs2087095	1.00[CEU][hapmap]
rs2101385	1.00[CEU][hapmap]
rs9446418	1.00[GIH][hapmap];0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3442082	chr6:72287826-72291575	Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
3	esv3359534	chr6:72287829-72291581	Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
4	esv3333847	chr6:72291462-72291925	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72289400-72295400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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