Variant report

Variant	rs199633
Chromosome Location	chr6:72252391-72252392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:72252188-72252484	Hela-S3	cervix:	n/a	chr6:72252330-72252341 chr6:72252332-72252341 chr6:72252330-72252343
2	CEBPB	chr6:72252176-72252499	IMR90	lung:	n/a	chr6:72252330-72252341 chr6:72252332-72252341 chr6:72252330-72252343
3	CEBPB	chr6:72252230-72252452	H1-hESC	embryonic stem cell:	n/a	chr6:72252330-72252341 chr6:72252332-72252341 chr6:72252330-72252343
4	CEBPB	chr6:72252179-72252494	K562	blood:	n/a	chr6:72252330-72252341 chr6:72252332-72252341 chr6:72252330-72252343
5	CEBPB	chr6:72252221-72252471	HepG2	liver:	n/a	chr6:72252330-72252341 chr6:72252332-72252341 chr6:72252330-72252343
6	CEBPB	chr6:72252294-72252427	A549	lung:	n/a	chr6:72252330-72252341 chr6:72252332-72252341 chr6:72252330-72252343

Variant related genes	Relation type
ENSG00000212099	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12183351	0.86[JPT][hapmap]
rs199634	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2087094	0.96[ASN][1000 genomes]
rs2087095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2101384	0.96[ASN][1000 genomes]
rs2101385	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2225662	0.93[ASN][1000 genomes]
rs56739711	0.96[ASN][1000 genomes]
rs57143006	0.99[ASN][1000 genomes]
rs58264386	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58600042	0.99[ASN][1000 genomes]
rs58603009	0.99[ASN][1000 genomes]
rs59171312	0.96[ASN][1000 genomes]
rs59288255	0.99[ASN][1000 genomes]
rs60059806	0.99[ASN][1000 genomes]
rs60517305	0.99[ASN][1000 genomes]
rs61710195	0.96[ASN][1000 genomes]
rs72648392	0.99[ASN][1000 genomes]
rs72648393	1.00[ASN][1000 genomes]
rs72648394	1.00[ASN][1000 genomes]
rs72648395	1.00[ASN][1000 genomes]
rs72648396	1.00[ASN][1000 genomes]
rs72648397	0.99[ASN][1000 genomes]
rs72648398	0.99[ASN][1000 genomes]
rs72648399	0.99[ASN][1000 genomes]
rs72648400	0.99[ASN][1000 genomes]
rs72648401	0.96[ASN][1000 genomes]
rs72648402	0.96[ASN][1000 genomes]
rs72651603	0.96[ASN][1000 genomes]
rs72651604	0.93[ASN][1000 genomes]
rs72651605	0.96[ASN][1000 genomes]
rs72651606	0.96[ASN][1000 genomes]
rs72651607	0.96[ASN][1000 genomes]
rs72651608	0.96[ASN][1000 genomes]
rs72651609	0.96[ASN][1000 genomes]
rs72651610	0.96[ASN][1000 genomes]
rs72651611	0.96[ASN][1000 genomes]
rs72651612	0.96[ASN][1000 genomes]
rs72651670	0.96[ASN][1000 genomes]
rs72651671	0.96[ASN][1000 genomes]
rs72651672	0.96[ASN][1000 genomes]
rs72651673	0.96[ASN][1000 genomes]
rs72651690	0.96[ASN][1000 genomes]
rs9442676	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72251200-72252800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:72251400-72255600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:72251800-72255800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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