Variant report

Variant	rs9442676
Chromosome Location	chr6:72250641-72250642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12183351	0.85[JPT][hapmap]
rs199633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs199634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2087094	0.96[ASN][1000 genomes]
rs2087095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2101384	0.96[ASN][1000 genomes]
rs2101385	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2225662	0.93[ASN][1000 genomes]
rs56739711	0.96[ASN][1000 genomes]
rs57143006	0.99[ASN][1000 genomes]
rs58264386	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58600042	0.99[ASN][1000 genomes]
rs58603009	0.99[ASN][1000 genomes]
rs59171312	0.96[ASN][1000 genomes]
rs59288255	0.99[ASN][1000 genomes]
rs60059806	0.99[ASN][1000 genomes]
rs60517305	0.99[ASN][1000 genomes]
rs61710195	0.96[ASN][1000 genomes]
rs72648392	0.99[ASN][1000 genomes]
rs72648393	1.00[ASN][1000 genomes]
rs72648394	1.00[ASN][1000 genomes]
rs72648395	1.00[ASN][1000 genomes]
rs72648396	1.00[ASN][1000 genomes]
rs72648397	0.99[ASN][1000 genomes]
rs72648398	0.99[ASN][1000 genomes]
rs72648399	0.99[ASN][1000 genomes]
rs72648400	0.99[ASN][1000 genomes]
rs72648401	0.96[ASN][1000 genomes]
rs72648402	0.96[ASN][1000 genomes]
rs72651603	0.96[ASN][1000 genomes]
rs72651604	0.93[ASN][1000 genomes]
rs72651605	0.96[ASN][1000 genomes]
rs72651606	0.96[ASN][1000 genomes]
rs72651607	0.96[ASN][1000 genomes]
rs72651608	0.96[ASN][1000 genomes]
rs72651609	0.96[ASN][1000 genomes]
rs72651610	0.96[ASN][1000 genomes]
rs72651611	0.96[ASN][1000 genomes]
rs72651612	0.96[ASN][1000 genomes]
rs72651670	0.96[ASN][1000 genomes]
rs72651671	0.96[ASN][1000 genomes]
rs72651672	0.96[ASN][1000 genomes]
rs72651673	0.96[ASN][1000 genomes]
rs72651690	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72248200-72250800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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