Variant report

Variant	rs34800792
Chromosome Location	chr6:72036762-72036763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10498878	0.92[AFR][1000 genomes]
rs13208791	0.92[AFR][1000 genomes]
rs13212120	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13212398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527718	0.97[EUR][1000 genomes]
rs16881125	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881149	0.89[AFR][1000 genomes]
rs16881155	0.89[AFR][1000 genomes]
rs2146370	0.89[AFR][1000 genomes]
rs33997649	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34137300	0.89[AFR][1000 genomes]
rs35154262	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61131500	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71555480	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7739908	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
2	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
5	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:72018000-72043200	Weak transcription	HSMM	muscle
8	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
9	chr6:72031600-72040400	Weak transcription	Lung	lung
10	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
11	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
13	chr6:72033800-72037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:72033800-72046000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
16	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:72034400-72052000	Weak transcription	Adipose Nuclei	Adipose
18	chr6:72034600-72037400	Weak transcription	Spleen	Spleen
19	chr6:72034800-72037200	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:72034800-72037400	Weak transcription	Right Ventricle	heart
21	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
22	chr6:72035800-72036800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:72035800-72037600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:72035800-72037600	Enhancers	NHDF-Ad	bronchial
25	chr6:72036000-72037400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:72036400-72036800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:72036600-72037200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:72036600-72043400	Weak transcription	A549	lung
29	chr6:72036600-72055800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links