Variant report

Variant	rs34210967
Chromosome Location	chr2:96600112-96600113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10159997	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11239134	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11814445	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12412154	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12414960	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12415004	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12416250	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416330	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12767435	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34118524	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34535651	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34539511	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34608530	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35473674	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs994179	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs999639	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3416818	chr2:96072529-96680708	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv874660	chr2:96091132-96669134	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv516044	chr2:96150959-96683378	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1003371	chr2:96326106-96684876	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv874666	chr2:96370571-96691125	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv428054	chr2:96438238-96627125	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv961832	chr2:96453677-96671971	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv874668	chr2:96465201-96600569	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv834304	chr2:96493545-96667472	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv508154	chr2:96534336-96609925	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1004486	chr2:96544604-96684876	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv874669	chr2:96547820-96691125	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv818073	chr2:96554851-96683378	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	esv1840487	chr2:96582807-96836512	Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
15	esv1811444	chr2:96583510-96631703	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv1810451	chr2:96583710-96622087	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
17	esv1812776	chr2:96584211-96622287	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv1805585	chr2:96589999-96629291	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
19	esv21137	chr2:96591462-96623415	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv820407	chr2:96591462-96623415	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
21	esv14492	chr2:96591462-96647854	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
22	esv3391744	chr2:96592125-96609923	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv3347102	chr2:96593525-96610023	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:96502800-96616600	Weak transcription	Fetal Stomach	stomach
2	chr2:96551400-96600800	Weak transcription	Brain Angular Gyrus	brain
3	chr2:96556200-96645000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:96556400-96628600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:96556400-96645000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:96557400-96656800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:96574200-96629600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:96574600-96627600	Weak transcription	HSMM	muscle
9	chr2:96575000-96600600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:96576800-96616200	Weak transcription	Brain Germinal Matrix	brain
11	chr2:96577600-96600200	Weak transcription	A549	lung
12	chr2:96577800-96603400	Weak transcription	Osteobl	bone
13	chr2:96577800-96647800	Weak transcription	NHDF-Ad	bronchial
14	chr2:96577800-96651000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:96577800-96656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:96578000-96645000	Weak transcription	NH-A	brain
17	chr2:96581400-96617000	Weak transcription	Pancreas	Pancrea
18	chr2:96582000-96601800	Weak transcription	Small Intestine	intestine
19	chr2:96582000-96605800	Weak transcription	Fetal Intestine Small	intestine
20	chr2:96582800-96656400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:96584000-96624600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:96584400-96621600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr2:96585000-96601600	Weak transcription	Gastric	stomach
24	chr2:96585200-96649000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr2:96585400-96616600	Weak transcription	Fetal Muscle Leg	muscle
26	chr2:96585600-96615400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr2:96585600-96627400	Weak transcription	Left Ventricle	heart
28	chr2:96586000-96657200	Weak transcription	Ovary	ovary
29	chr2:96587600-96607800	Weak transcription	Aorta	Aorta
30	chr2:96587800-96656600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr2:96588200-96600400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr2:96588200-96649000	Weak transcription	Fetal Intestine Large	intestine
33	chr2:96589000-96602800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr2:96589000-96616000	Weak transcription	Fetal Lung	lung
35	chr2:96589000-96631200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr2:96589000-96645400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr2:96589200-96600200	Weak transcription	Primary T cells from cord blood	blood
38	chr2:96589200-96605800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr2:96589400-96600600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr2:96589400-96607000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:96591000-96610200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:96591200-96616200	Weak transcription	Fetal Thymus	thymus
43	chr2:96593000-96610000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr2:96593600-96616200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr2:96593600-96645000	Weak transcription	Adipose Nuclei	Adipose
46	chr2:96593800-96600400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr2:96594400-96617600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr2:96594600-96623800	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr2:96594800-96600200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr2:96594800-96610000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links