Variant report

Variant	rs10159997
Chromosome Location	chr10:45061400-45061401
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10047389	0.81[AFR][1000 genomes]
rs10047392	0.81[AFR][1000 genomes]
rs10159976	0.81[AFR][1000 genomes]
rs10160128	0.81[AFR][1000 genomes]
rs10160186	0.86[AFR][1000 genomes]
rs10793543	0.81[AFR][1000 genomes]
rs10793544	0.81[AFR][1000 genomes]
rs10793545	0.86[AFR][1000 genomes]
rs10793546	0.86[AFR][1000 genomes]
rs10793547	0.86[AFR][1000 genomes]
rs10793548	0.86[AFR][1000 genomes]
rs10900065	0.81[AFR][1000 genomes]
rs10900066	0.81[AFR][1000 genomes]
rs10900067	0.86[AFR][1000 genomes]
rs10900068	0.86[AFR][1000 genomes]
rs10900069	0.86[AFR][1000 genomes]
rs10900070	0.81[AFR][1000 genomes]
rs10900071	0.85[AFR][1000 genomes]
rs11239134	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239135	0.86[AFR][1000 genomes]
rs11239136	0.86[AFR][1000 genomes]
rs11239138	0.86[AFR][1000 genomes]
rs11239142	0.86[AFR][1000 genomes]
rs11239144	0.86[AFR][1000 genomes]
rs11239145	0.81[AFR][1000 genomes]
rs11239146	0.84[AFR][1000 genomes]
rs11239147	0.86[AFR][1000 genomes]
rs11239148	0.86[AFR][1000 genomes]
rs11239149	0.86[AFR][1000 genomes]
rs11814445	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414960	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12415004	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12416250	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12416330	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12767435	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1962990	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34118524	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34210967	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34535651	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34539511	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34608530	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35473674	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs994179	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv12780	chr10:45060172-45062337	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45044600-45070200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:45059400-45062400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:45060600-45064800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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