Variant report

Variant	rs10900065
Chromosome Location	chr10:45060530-45060531
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10047358	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10047389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10047392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10047393	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10159760	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10159976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10159997	0.81[AFR][1000 genomes]
rs10160128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160186	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1021055	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10793543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793545	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10793546	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10793547	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10793548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10900066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900067	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10900068	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10900069	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10900070	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10900071	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10900072	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10900073	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10900074	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10900075	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10900076	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11239135	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239136	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239137	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239138	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239139	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239141	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239142	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239143	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239144	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239145	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239146	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239147	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239148	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239149	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239151	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239154	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11239156	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11239157	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11239158	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11239159	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11599242	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12242558	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12243864	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12244967	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12254041	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12775039	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17408014	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1962989	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962991	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1999774	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1999775	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2061970	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2061971	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4350324	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7082189	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7083920	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs749000	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs899889	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs899890	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs989077	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv12780	chr10:45060172-45062337	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45044600-45070200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:45059400-45062400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:45060200-45060600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:45060400-45060600	Enhancers	Fetal Muscle Trunk	muscle

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