Variant report

Variant	rs2061971
Chromosome Location	chr10:45089053-45089054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45083131..45085484-chr10:45088256..45090421,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1002589	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10047358	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10047389	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10047392	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10047393	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10159760	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10159976	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10160128	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10160186	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1021055	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10793543	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793544	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793545	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10793546	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10793547	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10793548	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10900065	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10900066	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10900067	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10900068	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10900069	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10900070	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10900071	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10900072	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10900073	0.85[EUR][1000 genomes]
rs10900074	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10900075	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10900076	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11239135	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239136	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239137	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11239138	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239139	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239141	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239142	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239143	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239144	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239145	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239146	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239147	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239148	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239149	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239151	0.82[EUR][1000 genomes]
rs11239154	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11239156	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11239157	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11239158	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11239159	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11239177	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11599242	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12242558	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12243864	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12244967	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12254041	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12775039	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1585913	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17408014	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1904836	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1904837	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1962989	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962991	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1999774	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1999775	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2061970	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4350324	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7082189	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7083920	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7097516	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7100914	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs749000	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs899889	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs899890	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9783143	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs989077	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs999640	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1042549	chr10:45071890-45117466	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45084600-45089400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:45085200-45089400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:45086000-45089400	Weak transcription	Colon Smooth Muscle	Colon

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