Variant report

Variant	rs1585913
Chromosome Location	chr10:45117976-45117977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1002589	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10047393	0.80[AMR][1000 genomes]
rs1021055	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10450452	0.98[ASN][1000 genomes]
rs10900074	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10900075	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10900076	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11239137	0.80[EUR][1000 genomes]
rs11239154	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11239156	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11239157	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11239158	0.85[AMR][1000 genomes]
rs11239159	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11239177	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12243864	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12244967	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12254041	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12775039	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1904836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904837	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962989	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1962991	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1999774	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1999775	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2061970	0.86[AMR][1000 genomes]
rs2061971	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4350324	0.86[AMR][1000 genomes]
rs7082189	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7083920	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7097516	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7100914	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs749000	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs899889	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs899890	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9783143	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs989077	0.85[AMR][1000 genomes]
rs999640	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45115200-45126800	Weak transcription	Aorta	Aorta
2	chr10:45115800-45123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:45116000-45121400	Weak transcription	NHDF-Ad	bronchial
4	chr10:45116400-45122800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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